MA_10433543g0010

Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 695.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10433543g0010
Cluster	HCCA: Cluster_399

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00031p00067070	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.03	Archaeplastida
AMTR_s00038p00071780	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g26540...	0.03	Archaeplastida
AMTR_s00039p00210570	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
AMTR_s00049p00210350	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00063p00172440	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
AMTR_s00077p00031710	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
AMTR_s00170p00032020	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g16860...	0.04	Archaeplastida
AMTR_s00173p00057570	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
AMTR_s00439p00010860	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g34400...	0.03	Archaeplastida
AMTR_s02193p00008230	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g02330,...	0.02	Archaeplastida
AT1G11290	CRR22	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT1G15510	VAC1, ECB2, ATECB2	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT5G03800	emb1899, EMB175, EMB166	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
GSVIVT01025295001	No alias	Pentatricopeptide repeat-containing protein At2g22410,...	0.03	Archaeplastida
GSVIVT01028819001	No alias	Pentatricopeptide repeat-containing protein At5g52850,...	0.03	Archaeplastida
GSVIVT01029885001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01036169001	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
GSVIVT01036975001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.03	Archaeplastida
Gb_01226	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_04828	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
Gb_06576	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_08619	No alias	RNA editing factor (MEF19)	0.03	Archaeplastida
Gb_13599	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_15639	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_18914	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Gb_20456	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.03	Archaeplastida
Gb_23023	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_24674	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_27797	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_28770	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_30993	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_32439	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_33061	No alias	RNA editing factor (MEF3)	0.05	Archaeplastida
Gb_33328	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_33718	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_33726	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_34736	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_36168	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Gb_38441	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Gb_39298	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_41233	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
LOC_Os02g53050.1	No alias	RNA editing factor (CLB19)	0.02	Archaeplastida
LOC_Os04g35650.1	No alias	Pentatricopeptide repeat-containing protein At3g26540...	0.03	Archaeplastida
LOC_Os06g08650.1	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.02	Archaeplastida
LOC_Os11g01836.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
LOC_Os12g01850.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_10214098g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_10277392g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
MA_10427342g0010	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
MA_10429371g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_10431227g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_10436764g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
MA_104937g0010	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
MA_107356g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_114722g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_119635g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_123466g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_124907g0010	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
MA_13057g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_138676g0010	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida
MA_14938g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_16226g0010	No alias	Pentatricopeptide repeat-containing protein At3g63370,...	0.03	Archaeplastida
MA_16339g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_20899g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_25515g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
MA_25584g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_30632g0020	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
MA_33151g0010	No alias	Pentatricopeptide repeat-containing protein At1g18485...	0.06	Archaeplastida
MA_33533g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
MA_3449g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_36643g0010	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.04	Archaeplastida
MA_381817g0020	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_4438g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_4503g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
MA_483636g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_50118g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.06	Archaeplastida
MA_519985g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_56322g0010	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
MA_59148g0010	No alias	RNA editing factor (MEF11)	0.03	Archaeplastida
MA_59599g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
MA_62181g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_6329g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
MA_683665g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_70677g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_77675g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_778985g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
MA_835083g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_8868720g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.05	Archaeplastida
MA_9384g0020	No alias	Pentatricopeptide repeat-containing protein At3g49170,...	0.07	Archaeplastida
MA_9526611g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_953240g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
Pp3c6_23550V3.1	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
Smo100125	No alias	Pentatricopeptide repeat-containing protein At5g39350...	0.02	Archaeplastida
Smo105033	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.02	Archaeplastida
Smo118817	No alias	Pentatricopeptide repeat-containing protein At3g26782,...	0.03	Archaeplastida
Smo121365	No alias	Pentatricopeptide repeat-containing protein At3g02330,...	0.02	Archaeplastida
Smo133872	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.02	Archaeplastida
Smo27025	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.03	Archaeplastida
Smo410093	No alias	No description available	0.03	Archaeplastida
Smo42377	No alias	Pentatricopeptide repeat-containing protein At2g34400...	0.03	Archaeplastida
Smo70138	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Smo73641	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Smo79052	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
Smo79457	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.02	Archaeplastida
Smo80739	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Smo84768	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.03	Archaeplastida
Solyc01g007850.2.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Solyc02g079260.2.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
Solyc04g005770.3.1	No alias	Pentatricopeptide repeat-containing protein At2g02750...	0.04	Archaeplastida
Solyc06g066080.1.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.03	Archaeplastida
Solyc07g009220.2.1	No alias	Pentatricopeptide repeat-containing protein At2g34400...	0.04	Archaeplastida
Zm00001e028503_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e029119_P001	No alias	Pentatricopeptide repeat-containing protein At2g33760...	0.03	Archaeplastida
Zm00001e040418_P001	No alias	Pentatricopeptide repeat-containing protein At3g05340...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Neighborhood
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006265	DNA topological change	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0009165	nucleotide biosynthetic process	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Neighborhood
MF	GO:0019238	cyclohydrolase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:0072521	purine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	854	901
IPR002885	Pentatricopeptide_repeat	652	699
IPR002885	Pentatricopeptide_repeat	347	394
IPR002885	Pentatricopeptide_repeat	448	496
IPR002885	Pentatricopeptide_repeat	753	798
IPR032867	DYW_dom	1027	1151
IPR002885	Pentatricopeptide_repeat	553	580
IPR002885	Pentatricopeptide_repeat	422	447
IPR002885	Pentatricopeptide_repeat	828	852
IPR002885	Pentatricopeptide_repeat	929	952
IPR002885	Pentatricopeptide_repeat	287	315

External Links

No external refs found!

MA_10433543g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation