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  5. MA_10435735g0010

MA_10435735g0010


Description : no hits & (original description: none)


Gene families : OG0000902 (Archaeplastida) Phylogenetic Tree(s): OG0000902_tree ,
OG_05_0002793 (LandPlants) Phylogenetic Tree(s): OG_05_0002793_tree ,
OG_06_0007321 (SeedPlants) Phylogenetic Tree(s): OG_06_0007321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10435735g0010
Cluster HCCA: Cluster_485

Target Alias Description ECC score Gene Family Method Actions
AT1G21700 CHB4, SWI3C, ATSWI3C SWITCH/sucrose nonfermenting 3C 0.02 Archaeplastida
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.02 Archaeplastida
Cpa|evm.model.tig00000388.52 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Cre08.g364050 No alias Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
GSVIVT01008584001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01013428001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
LOC_Os03g51220.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
LOC_Os04g40420.1 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
LOC_Os12g07730.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
Mp8g15610.1 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
Pp3c10_9060V3.1 No alias SWITCH/sucrose nonfermenting 3C 0.03 Archaeplastida
Pp3c16_6830V3.1 No alias DNA-binding family protein 0.02 Archaeplastida
Pp3c2_24980V3.1 No alias switch subunit 3 0.02 Archaeplastida
Solyc01g109510.3.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
Zm00001e012143_P002 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
Zm00001e024548_P001 No alias component BAF255/170 of chromatin remodeling complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!