AT5G20630 (ATGER3, GLP3B, GER3,...)


Aliases : ATGER3, GLP3B, GER3, GLP3A, GLP3

Description : germin 3


Gene families : OG0000034 (Archaeplastida) Phylogenetic Tree(s): OG0000034_tree ,
OG_05_0004417 (LandPlants) Phylogenetic Tree(s): OG_05_0004417_tree ,
OG_06_0002746 (SeedPlants) Phylogenetic Tree(s): OG_06_0002746_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G20630
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00089p00119070 evm_27.TU.AmTr_v1... Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AMTR_s00110p00020470 evm_27.TU.AmTr_v1... Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00114p00037920 evm_27.TU.AmTr_v1... Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G02335 GL22 germin-like protein subfamily 2 member 2 precursor 0.04 Archaeplastida
AT1G74820 No alias RmlC-like cupins superfamily protein 0.04 Archaeplastida
GSVIVT01000062001 No alias Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01000063001 No alias Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01000065001 No alias Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01000067001 No alias Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01000068001 No alias Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01000069001 No alias Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01013822001 No alias Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01020142001 No alias Germin-like protein 3-1 OS=Oryza sativa subsp. japonica 0.05 Archaeplastida
GSVIVT01021700001 No alias Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01021705001 No alias Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01030965001 No alias Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01030967001 No alias Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01031082001 No alias Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_11136 No alias Germin-like protein 1-1 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
Gb_25391 No alias Germin-like protein subfamily 1 member 1 OS=Arabidopsis... 0.04 Archaeplastida
Gb_30305 No alias Germin-like protein subfamily 2 member 1 OS=Arabidopsis... 0.03 Archaeplastida
Gb_34489 No alias Germin-like protein subfamily 2 member 1 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os01g50900.1 No alias Germin-like protein 1-2 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os04g52720.1 No alias Germin-like protein 4-1 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os05g19670.1 No alias Germin-like protein 5-1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os08g35750.1 No alias Germin-like protein 8-13 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os08g35760.1 No alias Germin-like protein 8-14 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_10429090g0010 No alias Germin-like protein subfamily 1 member 1 OS=Arabidopsis... 0.05 Archaeplastida
MA_42727g0010 No alias Germin-like protein 3-1 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_43266g0010 No alias Germin-like protein 8-4 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_7641850g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8404570g0010 No alias Germin-like protein subfamily 3 member 3 OS=Arabidopsis... 0.02 Archaeplastida
MA_9661534g0010 No alias Germin-like protein OS=Mesembryanthemum crystallinum... 0.02 Archaeplastida
Mp5g05170.1 No alias Germin-like protein subfamily 3 member 2 OS=Arabidopsis... 0.03 Archaeplastida
Smo89841 No alias Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g088300.3.1 No alias Germin-like protein subfamily 1 member 15 OS=Arabidopsis... 0.05 Archaeplastida
Solyc03g123410.1.1 No alias Auxin-binding protein ABP19a OS=Prunus persica... 0.03 Archaeplastida
Solyc07g041720.1.1 No alias Auxin-binding protein ABP19a OS=Prunus persica... 0.03 Archaeplastida
Zm00001e021636_P002 No alias Germin-like protein 12-2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e021637_P001 No alias Germin-like protein 12-2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e031079_P001 No alias Germin-like protein 8-14 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e032937_P001 No alias Germin-like protein 5-1 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
BP GO:0009409 response to cold IEP Interproscan
BP GO:0009409 response to cold RCA Interproscan
CC GO:0009505 plant-type cell wall IDA Interproscan
BP GO:0009735 response to cytokinin IDA Interproscan
BP GO:0010103 stomatal complex morphogenesis RCA Interproscan
BP GO:0018119 peptidyl-cysteine S-nitrosylation IDA Interproscan
BP GO:0019684 photosynthesis, light reaction RCA Interproscan
BP GO:0030003 cellular cation homeostasis RCA Interproscan
CC GO:0031012 extracellular matrix IDA Interproscan
BP GO:0042742 defense response to bacterium RCA Interproscan
CC GO:0048046 apoplast IDA Interproscan
BP GO:0070838 divalent metal ion transport RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000038 very long-chain fatty acid metabolic process IEP Neighborhood
MF GO:0003727 single-stranded RNA binding IEP Neighborhood
MF GO:0004854 xanthine dehydrogenase activity IEP Neighborhood
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Neighborhood
BP GO:0006949 syncytium formation IEP Neighborhood
BP GO:0006954 inflammatory response IEP Neighborhood
BP GO:0007623 circadian rhythm IEP Neighborhood
MF GO:0008187 poly-pyrimidine tract binding IEP Neighborhood
MF GO:0008266 poly(U) RNA binding IEP Neighborhood
MF GO:0008320 protein transmembrane transporter activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009534 chloroplast thylakoid IEP Neighborhood
BP GO:0009556 microsporogenesis IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009631 cold acclimation IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0009895 negative regulation of catabolic process IEP Neighborhood
CC GO:0009941 chloroplast envelope IEP Neighborhood
BP GO:0009965 leaf morphogenesis IEP Neighborhood
BP GO:0010375 stomatal complex patterning IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016630 protochlorophyllide reductase activity IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Neighborhood
MF GO:0022884 macromolecule transmembrane transporter activity IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0030497 fatty acid elongation IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031329 regulation of cellular catabolic process IEP Neighborhood
BP GO:0031330 negative regulation of cellular catabolic process IEP Neighborhood
CC GO:0031967 organelle envelope IEP Neighborhood
CC GO:0031975 envelope IEP Neighborhood
CC GO:0031976 plastid thylakoid IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034293 sexual sporulation IEP Neighborhood
BP GO:0040034 regulation of development, heterochronic IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
BP GO:0043487 regulation of RNA stability IEP Neighborhood
BP GO:0043489 RNA stabilization IEP Neighborhood
BP GO:0043934 sporulation IEP Neighborhood
CC GO:0044434 chloroplast part IEP Neighborhood
CC GO:0044435 plastid part IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0045962 positive regulation of development, heterochronic IEP Neighborhood
BP GO:0048236 plant-type sporogenesis IEP Neighborhood
BP GO:0048511 rhythmic process IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048582 positive regulation of post-embryonic development IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0051094 positive regulation of developmental process IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051240 positive regulation of multicellular organismal process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0051321 meiotic cell cycle IEP Neighborhood
BP GO:0052386 cell wall thickening IEP Neighborhood
BP GO:0052543 callose deposition in cell wall IEP Neighborhood
BP GO:1902369 negative regulation of RNA catabolic process IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
MF GO:1904680 peptide transmembrane transporter activity IEP Neighborhood
BP GO:1905392 plant organ morphogenesis IEP Neighborhood
BP GO:2000038 regulation of stomatal complex development IEP Neighborhood
BP GO:2000123 positive regulation of stomatal complex development IEP Neighborhood
InterPro domains Description Start Stop
IPR006045 Cupin_1 57 200
No external refs found!