- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : DExH-box ATP-dependent RNA helicase DExH15 chloroplastic OS=Arabidopsis thaliana (sp|b9dfg3|ise2_arath : 598.0)
Gene families : OG0004748 (Archaeplastida) Phylogenetic Tree(s): OG0004748_tree ,
OG_05_0005080 (LandPlants) Phylogenetic Tree(s): OG_05_0005080_tree ,
OG_06_0009035 (SeedPlants) Phylogenetic Tree(s): OG_06_0009035_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_10437000g0020 | |
| Cluster | HCCA: Cluster_269 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00090p00178540 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.07 | Archaeplastida | |
| AT1G70070 | ISE2, PDE317, EMB25 | DEAD/DEAH box helicase, putative | 0.04 | Archaeplastida | |
| Cpa|evm.model.tig00001239.1 | No alias | DExH-box ATP-dependent RNA helicase DExH15 chloroplastic... | 0.02 | Archaeplastida | |
| GSVIVT01020137001 | No alias | RNA processing.organelle machineries.RNA... | 0.07 | Archaeplastida | |
| LOC_Os02g50560.1 | No alias | RNA helicase (ISE2) | 0.02 | Archaeplastida | |
| MA_6807533g0010 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| Mp4g01470.1 | No alias | RNA helicase (ISE2) | 0.06 | Archaeplastida | |
| Pp3c4_20390V3.1 | No alias | DEAD/DEAH box helicase, putative | 0.03 | Archaeplastida | |
| Solyc05g006530.4.1 | No alias | RNA helicase (ISE2) | 0.06 | Archaeplastida | |
| Zm00001e015769_P001 | No alias | RNA helicase (ISE2) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0004540 | ribonuclease activity | IEP | Neighborhood |
| MF | GO:0005315 | inorganic phosphate transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006766 | vitamin metabolic process | IEP | Neighborhood |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Neighborhood |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Neighborhood |
| BP | GO:0006817 | phosphate ion transport | IEP | Neighborhood |
| BP | GO:0006820 | anion transport | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | Neighborhood |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | Neighborhood |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0015698 | inorganic anion transport | IEP | Neighborhood |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Neighborhood |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Neighborhood |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |