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  5. AT5G21040

AT5G21040 (FBX2)


Aliases : FBX2

Description : F-box protein 2


Gene families : OG0006532 (Archaeplastida) Phylogenetic Tree(s): OG0006532_tree ,
OG_05_0006166 (LandPlants) Phylogenetic Tree(s): OG_05_0006166_tree ,
OG_06_0006629 (SeedPlants) Phylogenetic Tree(s): OG_06_0006629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G21040
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Solyc06g073650.1.1 No alias F-box/WD-40 repeat-containing protein At5g21040... 0.02 Archaeplastida
Solyc11g072050.1.1 No alias F-box/WD-40 repeat-containing protein At5g21040... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0016036 cellular response to phosphate starvation IMP Interproscan
CC GO:0019005 SCF ubiquitin ligase complex ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000578 embryonic axis specification IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
BP GO:0002229 defense response to oomycetes IEP Neighborhood
BP GO:0002239 response to oomycetes IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003691 double-stranded telomeric DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity IEP Neighborhood
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Neighborhood
MF GO:0004620 phospholipase activity IEP Neighborhood
MF GO:0004629 phospholipase C activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005635 nuclear envelope IEP Neighborhood
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
CC GO:0005885 Arp2/3 protein complex IEP Neighborhood
BP GO:0006089 lactate metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006525 arginine metabolic process IEP Neighborhood
BP GO:0006526 arginine biosynthetic process IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007029 endoplasmic reticulum organization IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008083 growth factor activity IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009438 methylglyoxal metabolic process IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Neighborhood
BP GO:0009956 radial pattern formation IEP Neighborhood
BP GO:0010074 maintenance of meristem identity IEP Neighborhood
BP GO:0010080 regulation of floral meristem growth IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010286 heat acclimation IEP Neighborhood
BP GO:0010288 response to lead ion IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010492 maintenance of shoot apical meristem identity IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
BP GO:0016578 histone deubiquitination IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP Neighborhood
BP GO:0019827 stem cell population maintenance IEP Neighborhood
BP GO:0022622 root system development IEP Neighborhood
BP GO:0030029 actin filament-based process IEP Neighborhood
BP GO:0030048 actin filament-based movement IEP Neighborhood
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Neighborhood
MF GO:0030545 receptor regulator activity IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
MF GO:0032182 ubiquitin-like protein binding IEP Neighborhood
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Neighborhood
BP GO:0034635 glutathione transport IEP Neighborhood
BP GO:0035265 organ growth IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
BP GO:0042182 ketone catabolic process IEP Neighborhood
BP GO:0042939 tripeptide transport IEP Neighborhood
MF GO:0043047 single-stranded telomeric DNA binding IEP Neighborhood
MF GO:0043130 ubiquitin binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP Neighborhood
BP GO:0046185 aldehyde catabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0048018 receptor ligand activity IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051596 methylglyoxal catabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051645 Golgi localization IEP Neighborhood
BP GO:0051646 mitochondrion localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0060151 peroxisome localization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0060771 phyllotactic patterning IEP Neighborhood
BP GO:0060772 leaf phyllotactic patterning IEP Neighborhood
BP GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning IEP Neighborhood
BP GO:0061727 methylglyoxal catabolic process to lactate IEP Neighborhood
BP GO:0065001 specification of axis polarity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0070628 proteasome binding IEP Neighborhood
CC GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane IEP Neighborhood
CC GO:0071782 endoplasmic reticulum tubular network IEP Neighborhood
BP GO:0071786 endoplasmic reticulum tubular network organization IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0071985 multivesicular body sorting pathway IEP Neighborhood
BP GO:0072337 modified amino acid transport IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
BP GO:0098727 maintenance of cell number IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
CC GO:0098799 outer mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098827 endoplasmic reticulum subcompartment IEP Neighborhood
MF GO:0098847 sequence-specific single stranded DNA binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000034 regulation of seed maturation IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000693 positive regulation of seed maturation IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 251 283
IPR001680 WD40_repeat 156 190
IPR001810 F-box_dom 67 113
No external refs found!