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  5. MA_109221g0020

MA_109221g0020


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 474.0)


Gene families : OG0016307 (Archaeplastida) Phylogenetic Tree(s): OG0016307_tree ,
OG_05_0015855 (LandPlants) Phylogenetic Tree(s): OG_05_0015855_tree ,
OG_06_0015620 (SeedPlants) Phylogenetic Tree(s): OG_06_0015620_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_109221g0020
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Gb_03548 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_03550 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 476 499
IPR002885 Pentatricopeptide_repeat 606 635
IPR002885 Pentatricopeptide_repeat 205 228
IPR002885 Pentatricopeptide_repeat 578 598
IPR002885 Pentatricopeptide_repeat 401 447
IPR002885 Pentatricopeptide_repeat 301 346
IPR002885 Pentatricopeptide_repeat 502 541
IPR002885 Pentatricopeptide_repeat 704 751
No external refs found!