AT1G23030

Description : ARM repeat superfamily protein

Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0000670 (LandPlants) Phylogenetic Tree(s): OG_05_0000670_tree ,
OG_06_0001036 (SeedPlants) Phylogenetic Tree(s): OG_06_0001036_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G23030
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	evm_27.TU.AmTr_v1...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00025p00052670	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AT1G10560	PUB18, ATPUB18	plant U-box 18	0.05	Archaeplastida
AT5G01830	No alias	ARM repeat superfamily protein	0.04	Archaeplastida
GSVIVT01023893001	No alias	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.05	Archaeplastida
Gb_10627	No alias	U-box domain-containing protein 13 OS=Arabidopsis...	0.03	Archaeplastida
Gb_12875	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Gb_13754	No alias	E3 ubiquitin ligase (PUB)	0.06	Archaeplastida
Gb_29276	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
LOC_Os01g60860.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g49950.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
LOC_Os08g37570.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	Archaeplastida
Pp3c10_4480V3.1	No alias	plant U-box 13	0.03	Archaeplastida
Pp3c23_15760V3.1	No alias	plant U-box 13	0.02	Archaeplastida
Smo61948	No alias	U-box domain-containing protein 13 OS=Arabidopsis thaliana	0.03	Archaeplastida
Solyc02g072080.1.1	No alias	U-box domain-containing protein 17 OS=Arabidopsis...	0.03	Archaeplastida
Solyc04g007640.3.1	No alias	E3 ubiquitin ligase (PUB)	0.07	Archaeplastida
Solyc04g082440.4.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.04	Archaeplastida
Solyc06g076040.3.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Zm00001e003398_P001	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e028839_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e031915_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0008150	biological_process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
BP	GO:0001558	regulation of cell growth	IEP	Neighborhood
MF	GO:0002020	protease binding	IEP	Neighborhood
MF	GO:0004089	carbonate dehydratase activity	IEP	Neighborhood
MF	GO:0004560	alpha-L-fucosidase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0005200	structural constituent of cytoskeleton	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
CC	GO:0005768	endosome	IEP	Neighborhood
CC	GO:0005773	vacuole	IEP	Neighborhood
CC	GO:0005774	vacuolar membrane	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005802	trans-Golgi network	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006084	acetyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006637	acyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006732	coenzyme metabolic process	IEP	Neighborhood
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006816	calcium ion transport	IEP	Neighborhood
BP	GO:0007030	Golgi organization	IEP	Neighborhood
BP	GO:0007155	cell adhesion	IEP	Neighborhood
BP	GO:0007166	cell surface receptor signaling pathway	IEP	Neighborhood
BP	GO:0007167	enzyme linked receptor protein signaling pathway	IEP	Neighborhood
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0008156	negative regulation of DNA replication	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
BP	GO:0008356	asymmetric cell division	IEP	Neighborhood
BP	GO:0008361	regulation of cell size	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009117	nucleotide metabolic process	IEP	Neighborhood
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009259	ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009629	response to gravity	IEP	Neighborhood
BP	GO:0009645	response to low light intensity stimulus	IEP	Neighborhood
BP	GO:0009650	UV protection	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
MF	GO:0009672	auxin:proton symporter activity	IEP	Neighborhood
BP	GO:0009741	response to brassinosteroid	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009832	plant-type cell wall biogenesis	IEP	Neighborhood
CC	GO:0009897	external side of plasma membrane	IEP	Neighborhood
BP	GO:0009914	hormone transport	IEP	Neighborhood
BP	GO:0009926	auxin polar transport	IEP	Neighborhood
CC	GO:0009930	longitudinal side of cell surface	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0009958	positive gravitropism	IEP	Neighborhood
CC	GO:0009986	cell surface	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0010015	root morphogenesis	IEP	Neighborhood
BP	GO:0010037	response to carbon dioxide	IEP	Neighborhood
BP	GO:0010053	root epidermal cell differentiation	IEP	Neighborhood
BP	GO:0010082	regulation of root meristem growth	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0010315	auxin efflux	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Neighborhood
BP	GO:0010948	negative regulation of cell cycle process	IEP	Neighborhood
CC	GO:0012506	vesicle membrane	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0015928	fucosidase activity	IEP	Neighborhood
BP	GO:0015976	carbon utilization	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
CC	GO:0016328	lateral plasma membrane	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Neighborhood
BP	GO:0019693	ribose phosphate metabolic process	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0022604	regulation of cell morphogenesis	IEP	Neighborhood
BP	GO:0022610	biological adhesion	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
BP	GO:0030308	negative regulation of cell growth	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030570	pectate lyase activity	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0032875	regulation of DNA endoreduplication	IEP	Neighborhood
BP	GO:0032876	negative regulation of DNA endoreduplication	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0035383	thioester metabolic process	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0042446	hormone biosynthetic process	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044437	vacuolar part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
CC	GO:0045298	tubulin complex	IEP	Neighborhood
BP	GO:0045926	negative regulation of growth	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
CC	GO:0046658	anchored component of plasma membrane	IEP	Neighborhood
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	Neighborhood
MF	GO:0047513	1,2-alpha-L-fucosidase activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0048469	cell maturation	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0048764	trichoblast maturation	IEP	Neighborhood
BP	GO:0048765	root hair cell differentiation	IEP	Neighborhood
BP	GO:0048766	root hair initiation	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0051510	regulation of unidimensional cell growth	IEP	Neighborhood
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0060918	auxin transport	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0070838	divalent metal ion transport	IEP	Neighborhood
BP	GO:0071258	cellular response to gravity	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0072347	response to anesthetic	IEP	Neighborhood
BP	GO:0072511	divalent inorganic cation transport	IEP	Neighborhood
BP	GO:0072521	purine-containing compound metabolic process	IEP	Neighborhood
MF	GO:0080161	auxin transmembrane transporter activity	IEP	Neighborhood
BP	GO:0080167	response to karrikin	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:0090627	plant epidermal cell differentiation	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
CC	GO:0098552	side of membrane	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098791	Golgi subcompartment	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000038	regulation of stomatal complex development	IEP	Neighborhood
BP	GO:2000104	negative regulation of DNA-dependent DNA replication	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	241	312
IPR000225	Armadillo	363	401
IPR000225	Armadillo	445	483

External Links

No external refs found!

AT1G23030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation