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Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 493.0)
Gene families : OG0012333 (Archaeplastida) Phylogenetic Tree(s): OG0012333_tree ,
OG_05_0092648 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0073494 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_121476g0010 | |
| Cluster | HCCA: Cluster_399 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_33545 | No alias | RNA editing factor (MEF3) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0008536 | Ran GTPase binding | IEP | Neighborhood |
| MF | GO:0017016 | Ras GTPase binding | IEP | Neighborhood |
| MF | GO:0019899 | enzyme binding | IEP | Neighborhood |
| MF | GO:0031267 | small GTPase binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| MF | GO:0051020 | GTPase binding | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Neighborhood |
| MF | GO:0051540 | metal cluster binding | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 541 | 590 |
| IPR002885 | Pentatricopeptide_repeat | 440 | 489 |
| IPR002885 | Pentatricopeptide_repeat | 256 | 304 |
| IPR002885 | Pentatricopeptide_repeat | 128 | 174 |
| IPR002885 | Pentatricopeptide_repeat | 381 | 405 |
| IPR002885 | Pentatricopeptide_repeat | 616 | 640 |
| IPR002885 | Pentatricopeptide_repeat | 516 | 539 |
| IPR002885 | Pentatricopeptide_repeat | 360 | 378 |
| IPR002885 | Pentatricopeptide_repeat | 332 | 357 |
| IPR002885 | Pentatricopeptide_repeat | 226 | 254 |
| No external refs found! |