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  5. MA_12280g0010

MA_12280g0010


Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 513.0)


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0000990 (SeedPlants) Phylogenetic Tree(s): OG_06_0000990_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_12280g0010
Cluster HCCA: Cluster_364

Target Alias Description ECC score Gene Family Method Actions
AT2G29140 PUM3, APUM3 pumilio 3 0.03 Archaeplastida
AT2G29200 PUM1, APUM1 pumilio 1 0.02 Archaeplastida
Gb_31285 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g74030.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os05g01910.1 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e027653_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e029661_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e040593_P002 No alias Pumilio homolog 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0005047 signal recognition particle binding IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR012940 NABP 330 748
IPR001313 Pumilio_RNA-bd_rpt 894 923
IPR001313 Pumilio_RNA-bd_rpt 786 816
IPR001313 Pumilio_RNA-bd_rpt 749 782
IPR001313 Pumilio_RNA-bd_rpt 931 953
IPR001313 Pumilio_RNA-bd_rpt 822 854
IPR001313 Pumilio_RNA-bd_rpt 860 890
No external refs found!