MA_133919g0010

Description : pectin methylesterase

Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_133919g0010
Cluster	HCCA: Cluster_243

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00038p00046180	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00129p00047530	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AT1G53840	PME1, ATPME1	pectin methylesterase 1	0.03	Archaeplastida
AT3G10710	RHS12	root hair specific 12	0.03	Archaeplastida
AT3G14310	ATPME3, PME3	pectin methylesterase 3	0.03	Archaeplastida
AT3G43270	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT4G33220	PME44, ATPME44	pectin methylesterase 44	0.03	Archaeplastida
AT5G04960	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT5G20860	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
GSVIVT01018620001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01027356001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01027652001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01028040001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01037344001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01037348001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Gb_10523	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_18512	No alias	pectin methylesterase	0.03	Archaeplastida
Gb_28387	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g65790.1	No alias	pectin methylesterase	0.02	Archaeplastida
LOC_Os05g29790.1	No alias	pectin methylesterase	0.03	Archaeplastida
MA_10372207g0010	No alias	pectin methylesterase	0.04	Archaeplastida
Pp3c10_25030V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
Pp3c17_6440V3.1	No alias	pectin methylesterase PCR fragment F	0.02	Archaeplastida
Smo114014	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Solyc02g014300.2.1	No alias	pectin methylesterase	0.02	Archaeplastida
Solyc02g080200.4.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc02g081990.3.1	No alias	pectin methylesterase	0.02	Archaeplastida
Solyc03g083870.4.1	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e017514_P001	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e017515_P001	No alias	pectin methylesterase	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0008037	cell recognition	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0048544	recognition of pollen	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
MF	GO:0051287	NAD binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	212	507
IPR006501	Pectinesterase_inhib_dom	6	131

External Links

No external refs found!

MA_133919g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation