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  5. MA_13648g0020

MA_13648g0020


Description : histone chaperone (SPT6). component SPT6 of SPT6-IWS1 transcription elongation complex


Gene families : OG0003491 (Archaeplastida) Phylogenetic Tree(s): OG0003491_tree ,
OG_05_0005087 (LandPlants) Phylogenetic Tree(s): OG_05_0005087_tree ,
OG_06_0005020 (SeedPlants) Phylogenetic Tree(s): OG_06_0005020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_13648g0020
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00136890 evm_27.TU.AmTr_v1... Chromatin organisation.histone chaperone... 0.06 Archaeplastida
AT1G65440 GTB1 global transcription factor group B1 0.08 Archaeplastida
Cpa|evm.model.tig00001486.8 No alias Chromatin organisation.histone chaperone... 0.02 Archaeplastida
Cre09.g403182 No alias Chromatin organisation.histone chaperone... 0.05 Archaeplastida
GSVIVT01025815001 No alias Chromatin organisation.histone chaperone... 0.06 Archaeplastida
Gb_29261 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.05 Archaeplastida
LOC_Os05g41510.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.04 Archaeplastida
Mp2g25720.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.08 Archaeplastida
Pp3c5_23930V3.1 No alias global transcription factor group B1 0.04 Archaeplastida
Pp3c5_24480V3.1 No alias global transcription factor group B1 0.06 Archaeplastida
Smo164675 No alias Chromatin organisation.histone chaperone... 0.04 Archaeplastida
Solyc10g081020.2.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.06 Archaeplastida
Zm00001e032018_P003 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR028231 Spt6_YqgF 753 905
IPR028083 Spt6_acidic_N_dom 38 132
IPR028088 Spt6_HTH_DNA-bd_dom 322 442
IPR035420 Spt6_SH2 1239 1292
IPR032706 Spt6_HHH 909 1011
No external refs found!