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  5. MA_137876g0010

MA_137876g0010


Description : no hits & (original description: none)


Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0003010 (LandPlants) Phylogenetic Tree(s): OG_05_0003010_tree ,
OG_06_0004376 (SeedPlants) Phylogenetic Tree(s): OG_06_0004376_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_137876g0010
Cluster HCCA: Cluster_456

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00248060 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.05 Archaeplastida
AMTR_s00056p00209700 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AT1G08540 ATSIG1, SIGB,... RNApolymerase sigma subunit 2 0.02 Archaeplastida
AT1G64860 SIGB, SIG2,... sigma factor A 0.04 Archaeplastida
AT2G36990 SIGF, SIG6,... RNApolymerase sigma-subunit F 0.03 Archaeplastida
AT3G53920 SIGC, SIG3 RNApolymerase sigma-subunit C 0.03 Archaeplastida
AT5G24120 ATSIG5, SIG5, SIGE sigma factor E 0.03 Archaeplastida
GSVIVT01019326001 No alias RNA biosynthesis.organelle... 0.05 Archaeplastida
GSVIVT01025717001 No alias RNA biosynthesis.organelle... 0.05 Archaeplastida
GSVIVT01032193001 No alias RNA biosynthesis.organelle... 0.03 Archaeplastida
LOC_Os05g50930.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
LOC_Os11g26160.1 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
Mp7g15030.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Pp3c14_4440V3.1 No alias sigma factor A 0.04 Archaeplastida
Pp3c2_5110V3.1 No alias RNApolymerase sigma subunit 2 0.02 Archaeplastida
Solyc01g081490.3.1 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
Solyc06g072710.3.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Solyc09g008040.3.1 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
Zm00001e021683_P001 No alias basal transcription factor (Sigma) 0.05 Archaeplastida
Zm00001e040174_P003 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!