MA_138676g0010

Description : RNA editing factor (ECD1)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_138676g0010
Cluster	HCCA: Cluster_88

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00155170	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
AMTR_s00003p00222920	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
AMTR_s00014p00068600	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g43980,...	0.03	Archaeplastida
AMTR_s00029p00235510	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.02	Archaeplastida
AMTR_s00030p00109240	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
AMTR_s00040p00098330	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g46790,...	0.02	Archaeplastida
AMTR_s00049p00223290	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00051p00085060	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g16610...	0.03	Archaeplastida
AMTR_s00057p00087430	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.02	Archaeplastida
AMTR_s00065p00031420	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g33680...	0.02	Archaeplastida
AMTR_s00068p00072270	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
AMTR_s00130p00019530	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.02	Archaeplastida
AMTR_s00147p00097570	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
AT1G11290	CRR22	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT1G15510	VAC1, ECB2, ATECB2	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G63370	OTP86	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT4G13650	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.06	Archaeplastida
AT4G18750	DOT4	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT5G03800	emb1899, EMB175, EMB166	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
GSVIVT01011333001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.03	Archaeplastida
GSVIVT01012201001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.03	Archaeplastida
GSVIVT01016874001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.02	Archaeplastida
GSVIVT01017989001	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
GSVIVT01025295001	No alias	Pentatricopeptide repeat-containing protein At2g22410,...	0.02	Archaeplastida
GSVIVT01030080001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01035491001	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.02	Archaeplastida
Gb_00862	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_01327	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.02	Archaeplastida
Gb_02037	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_03345	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_03571	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_03997	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_04167	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_04420	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
Gb_04533	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_05942	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_06185	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
Gb_06193	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
Gb_07723	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_08744	No alias	RNA editing factor (OTP82)	0.02	Archaeplastida
Gb_09409	No alias	RNA editing factor (MEF19). RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_10113	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.02	Archaeplastida
Gb_10152	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
Gb_14172	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_14324	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_14445	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_16062	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_16448	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
Gb_17379	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
Gb_18166	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_19299	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_20749	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_21054	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
Gb_23083	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_23088	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Gb_23678	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
Gb_23934	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.02	Archaeplastida
Gb_24126	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
Gb_24515	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_24928	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_25129	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida
Gb_26049	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_26158	No alias	RNA editing factor (OTP82)	0.02	Archaeplastida
Gb_26526	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.06	Archaeplastida
Gb_26581	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_27176	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
Gb_27880	No alias	RNA editing factor (ECB2/VAC1)	0.03	Archaeplastida
Gb_28393	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_28582	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_30004	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
Gb_30918	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_31266	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_31702	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_32921	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_33210	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_33718	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_34236	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
Gb_35396	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.02	Archaeplastida
Gb_36614	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_36806	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.07	Archaeplastida
Gb_37509	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
Gb_37516	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_38129	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_38158	No alias	OTP70 plastidial RNA splicing factor	0.02	Archaeplastida
Gb_38417	No alias	OTP70 plastidial RNA splicing factor	0.03	Archaeplastida
Gb_39402	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_39406	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_40040	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
LOC_Os07g09370.1	No alias	RNA editing factor (CRR28)	0.02	Archaeplastida
LOC_Os10g34720.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
MA_10433543g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_122899g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_16339g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
MA_59599g0010	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.02	Archaeplastida
MA_77675g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_8319g0010	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.02	Archaeplastida
Smo105356	No alias	Pentatricopeptide repeat-containing protein At3g63370,...	0.02	Archaeplastida
Smo47998	No alias	Pentatricopeptide repeat-containing protein At2g34400...	0.02	Archaeplastida
Smo70138	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
Solyc01g007850.2.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	Archaeplastida
Solyc01g095160.3.1	No alias	Pentatricopeptide repeat-containing protein At4g37170...	0.03	Archaeplastida
Solyc01g098150.3.1	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.03	Archaeplastida
Solyc02g088470.1.1	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.03	Archaeplastida
Solyc03g025700.2.1	No alias	OTP70 plastidial RNA splicing factor	0.03	Archaeplastida
Solyc03g119950.1.1	No alias	RNA editing factor (ECB2/VAC1)	0.05	Archaeplastida
Solyc04g005460.1.1	No alias	Pentatricopeptide repeat-containing protein At2g20540...	0.02	Archaeplastida
Solyc05g006800.2.1	No alias	Pentatricopeptide repeat-containing protein At1g59720,...	0.04	Archaeplastida
Solyc07g062820.1.1	No alias	RNA editing factor (SEL1/PDM1)	0.05	Archaeplastida
Solyc07g065730.1.1	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.03	Archaeplastida
Solyc09g082450.1.1	No alias	RNA editing factor (YS1)	0.05	Archaeplastida
Solyc11g011860.1.1	No alias	Pentatricopeptide repeat-containing protein At3g14330...	0.02	Archaeplastida
Solyc11g071370.1.1	No alias	RNA editing factor (CLB19)	0.02	Archaeplastida
Solyc12g096510.3.1	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.02	Archaeplastida
Zm00001e004121_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e031351_P001	No alias	RNA editing factor (ECD1)	0.03	Archaeplastida
Zm00001e032499_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e034445_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	287	334
IPR002885	Pentatricopeptide_repeat	492	540
IPR002885	Pentatricopeptide_repeat	594	641
IPR002885	Pentatricopeptide_repeat	187	232
IPR002885	Pentatricopeptide_repeat	391	439
IPR002885	Pentatricopeptide_repeat	669	692
IPR002885	Pentatricopeptide_repeat	151	183
IPR032867	DYW_dom	768	891

External Links

No external refs found!

MA_138676g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation