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AT5G27530


Description : Pectin lyase-like superfamily protein


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0017377 (LandPlants) Phylogenetic Tree(s): OG_05_0017377_tree ,
OG_06_0015125 (SeedPlants) Phylogenetic Tree(s): OG_06_0015125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G27530
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AT4G35670 No alias Pectin lyase-like superfamily protein 0.09 Archaeplastida
AT5G39910 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
MA_10862g0010 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004565 beta-galactosidase activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
MF GO:0015925 galactosidase activity IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
MF GO:0019137 thioglucosidase activity IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 84 398
No external refs found!