AT5G27880

Description : C2H2 and C2HC zinc fingers superfamily protein

Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0017390 (LandPlants) Phylogenetic Tree(s): OG_05_0017390_tree ,
OG_06_0016920 (SeedPlants) Phylogenetic Tree(s): OG_06_0016920_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G27880
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00086480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
AMTR_s00079p00109960	evm_27.TU.AmTr_v1...	Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
AMTR_s00079p00169240	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.02	Archaeplastida
AMTR_s00149p00097070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
AT1G13400	JGL, NUB	C2H2 and C2HC zinc fingers superfamily protein	0.04	Archaeplastida
AT1G67030	ZFP6	zinc finger protein 6	0.04	Archaeplastida
AT1G68360	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.03	Archaeplastida
AT1G68480	JAG	C2H2 and C2HC zinc fingers superfamily protein	0.02	Archaeplastida
AT2G42410	ZFP11, ATZFP11	zinc finger protein 11	0.04	Archaeplastida
AT3G23130	SUP, FLO10, FON1	C2H2 and C2HC zinc fingers superfamily protein	0.06	Archaeplastida
AT5G01860	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.04	Archaeplastida
AT5G05120	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.06	Archaeplastida
AT5G10970	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.04	Archaeplastida
AT5G48890	No alias	C2H2-like zinc finger protein	0.04	Archaeplastida
GSVIVT01009401001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.01	Archaeplastida
GSVIVT01011868001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
GSVIVT01013168001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
GSVIVT01031007001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	Archaeplastida
Gb_25685	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Gb_27734	No alias	Zinc finger protein 10 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os01g04120.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os02g01090.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os03g11680.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
LOC_Os05g20930.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
LOC_Os07g23450.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os09g38610.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
LOC_Os12g42250.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
MA_10430024g0010	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
MA_2800g0010	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Pp3c20_10790V3.1	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.02	Archaeplastida
Pp3c23_800V3.1	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.02	Archaeplastida
Pp3c26_13140V3.1	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.02	Archaeplastida
Solyc05g006310.3.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc05g009180.1.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc06g068390.1.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Solyc09g011120.1.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Solyc09g089590.1.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Solyc11g011890.2.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e016256_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Zm00001e017009_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e025728_P002	No alias	Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp....	0.02	Archaeplastida
Zm00001e032639_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e034092_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e034219_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Zm00001e034220_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Zm00001e034221_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Zm00001e034883_P001	No alias	C2H2 zinc finger transcription factor	0.07	Archaeplastida
Zm00001e036816_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Zm00001e037944_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	IEP	Neighborhood
MF	GO:0004029	aldehyde dehydrogenase (NAD) activity	IEP	Neighborhood
MF	GO:0004031	aldehyde oxidase activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0004805	trehalose-phosphatase activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0005991	trehalose metabolic process	IEP	Neighborhood
BP	GO:0005992	trehalose biosynthetic process	IEP	Neighborhood
BP	GO:0006349	regulation of gene expression by genetic imprinting	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0009685	gibberellin metabolic process	IEP	Neighborhood
BP	GO:0009686	gibberellin biosynthetic process	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009957	epidermal cell fate specification	IEP	Neighborhood
BP	GO:0009960	endosperm development	IEP	Neighborhood
BP	GO:0009996	negative regulation of cell fate specification	IEP	Neighborhood
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	Neighborhood
BP	GO:0010051	xylem and phloem pattern formation	IEP	Neighborhood
BP	GO:0010061	regulation of trichoblast fate specification	IEP	Neighborhood
BP	GO:0010062	negative regulation of trichoblast fate specification	IEP	Neighborhood
BP	GO:0010191	mucilage metabolic process	IEP	Neighborhood
BP	GO:0010192	mucilage biosynthetic process	IEP	Neighborhood
BP	GO:0010214	seed coat development	IEP	Neighborhood
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IEP	Neighborhood
BP	GO:0010453	regulation of cell fate commitment	IEP	Neighborhood
BP	GO:0010454	negative regulation of cell fate commitment	IEP	Neighborhood
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0016101	diterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016623	oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016707	gibberellin 3-beta-dioxygenase activity	IEP	Neighborhood
MF	GO:0016881	acid-amino acid ligase activity	IEP	Neighborhood
MF	GO:0018479	benzaldehyde dehydrogenase (NAD+) activity	IEP	Neighborhood
MF	GO:0018488	aryl-aldehyde oxidase activity	IEP	Neighborhood
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0042659	regulation of cell fate specification	IEP	Neighborhood
CC	GO:0043076	megasporocyte nucleus	IEP	Neighborhood
CC	GO:0043078	polar nucleus	IEP	Neighborhood
MF	GO:0045544	gibberellin 20-oxidase activity	IEP	Neighborhood
BP	GO:0045596	negative regulation of cell differentiation	IEP	Neighborhood
BP	GO:0046351	disaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0046688	response to copper ion	IEP	Neighborhood
BP	GO:0048317	seed morphogenesis	IEP	Neighborhood
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	Neighborhood
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	Neighborhood
MF	GO:0050362	L-tryptophan:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
MF	GO:0070529	L-tryptophan aminotransferase activity	IEP	Neighborhood
BP	GO:0071514	genetic imprinting	IEP	Neighborhood
BP	GO:0080050	regulation of seed development	IEP	Neighborhood
MF	GO:0080097	L-tryptophan:pyruvate aminotransferase activity	IEP	Neighborhood
BP	GO:0080113	regulation of seed growth	IEP	Neighborhood
BP	GO:1903888	regulation of plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:1903889	negative regulation of plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	Neighborhood
BP	GO:1905422	negative regulation of plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000014	regulation of endosperm development	IEP	Neighborhood
BP	GO:2000067	regulation of root morphogenesis	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G27880

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation