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  5. MA_14659g0010

MA_14659g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 655.0)


Gene families : OG0002360 (Archaeplastida) Phylogenetic Tree(s): OG0002360_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_14659g0010
Cluster HCCA: Cluster_251

Target Alias Description ECC score Gene Family Method Actions
Gb_05982 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_07106 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_13717 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_14391 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_15797 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
Gb_18978 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.12 Archaeplastida
Gb_28765 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_31794 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_33367 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_38824 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
LOC_Os08g05750.1 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 Archaeplastida
MA_121102g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_858608g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Zm00001e015695_P001 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.02 Archaeplastida
Zm00001e032581_P001 No alias RNA editing factor (BLX) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 755 879
IPR002885 Pentatricopeptide_repeat 449 477
IPR002885 Pentatricopeptide_repeat 582 629
IPR002885 Pentatricopeptide_repeat 282 330
IPR002885 Pentatricopeptide_repeat 383 431
IPR002885 Pentatricopeptide_repeat 481 528
IPR002885 Pentatricopeptide_repeat 131 152
IPR002885 Pentatricopeptide_repeat 153 183
IPR002885 Pentatricopeptide_repeat 184 210
IPR002885 Pentatricopeptide_repeat 657 680
No external refs found!