AT1G23420 (INO)

Aliases : INO

Description : Plant-specific transcription factor YABBY family protein

Gene families : OG0000890 (Archaeplastida) Phylogenetic Tree(s): OG0000890_tree ,
OG_05_0002078 (LandPlants) Phylogenetic Tree(s): OG_05_0002078_tree ,
OG_06_0001123 (SeedPlants) Phylogenetic Tree(s): OG_06_0001123_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G23420
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00199030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.07	Archaeplastida
AMTR_s00078p00029420	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00085p00032940	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.07	Archaeplastida
AT2G45190	AFO, YAB1, FIL	Plant-specific transcription factor YABBY family protein	0.06	Archaeplastida
AT4G00180	YAB3	Plant-specific transcription factor YABBY family protein	0.03	Archaeplastida
GSVIVT01012246001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.1	Archaeplastida
GSVIVT01015567001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
GSVIVT01022586001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01027648001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01037533001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
Gb_22423	No alias	transcription factor (YABBY)	0.05	Archaeplastida
LOC_Os02g42950.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
LOC_Os04g45330.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
LOC_Os10g36420.1	No alias	transcription factor (YABBY)	0.05	Archaeplastida
LOC_Os12g42610.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
MA_10432332g0010	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Solyc01g010240.3.1	No alias	transcription factor (YABBY)	0.1	Archaeplastida
Solyc01g091010.3.1	No alias	transcription factor (YABBY)	0.06	Archaeplastida
Solyc05g005240.2.1	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Solyc06g073920.3.1	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Solyc08g079100.3.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Solyc11g071810.2.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e000845_P005	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e003268_P003	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Zm00001e004396_P001	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Zm00001e007412_P003	No alias	transcription factor (YABBY)	0.03	Archaeplastida
Zm00001e012387_P001	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Zm00001e012388_P001	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e012577_P001	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e017951_P002	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e032845_P002	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Zm00001e038717_P002	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e041322_P001	No alias	transcription factor (YABBY)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006333	chromatin assembly or disassembly	RCA	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048481	plant ovule development	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Neighborhood
BP	GO:0001708	cell fate specification	IEP	Neighborhood
BP	GO:0002237	response to molecule of bacterial origin	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0006308	DNA catabolic process	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0008356	asymmetric cell division	IEP	Neighborhood
BP	GO:0008360	regulation of cell shape	IEP	Neighborhood
MF	GO:0008810	cellulase activity	IEP	Neighborhood
BP	GO:0009553	embryo sac development	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009786	regulation of asymmetric cell division	IEP	Neighborhood
BP	GO:0009790	embryo development	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009793	embryo development ending in seed dormancy	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009827	plant-type cell wall modification	IEP	Neighborhood
BP	GO:0009845	seed germination	IEP	Neighborhood
BP	GO:0009860	pollen tube growth	IEP	Neighborhood
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009900	dehiscence	IEP	Neighborhood
BP	GO:0009908	flower development	IEP	Neighborhood
BP	GO:0009909	regulation of flower development	IEP	Neighborhood
BP	GO:0009913	epidermal cell differentiation	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
CC	GO:0009986	cell surface	IEP	Neighborhood
BP	GO:0010047	fruit dehiscence	IEP	Neighborhood
BP	GO:0010048	vernalization response	IEP	Neighborhood
BP	GO:0010093	specification of floral organ identity	IEP	Neighborhood
BP	GO:0010103	stomatal complex morphogenesis	IEP	Neighborhood
BP	GO:0010160	formation of animal organ boundary	IEP	Neighborhood
CC	GO:0010169	thioglucosidase complex	IEP	Neighborhood
MF	GO:0010180	thioglucosidase binding	IEP	Neighborhood
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	Neighborhood
BP	GO:0010234	anther wall tapetum cell fate specification	IEP	Neighborhood
BP	GO:0010321	regulation of vegetative phase change	IEP	Neighborhood
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Neighborhood
BP	GO:0010430	fatty acid omega-oxidation	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010500	transmitting tissue development	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Neighborhood
MF	GO:0019199	transmembrane receptor protein kinase activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
CC	GO:0030139	endocytic vesicle	IEP	Neighborhood
BP	GO:0030855	epithelial cell differentiation	IEP	Neighborhood
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Neighborhood
MF	GO:0038023	signaling receptor activity	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0045596	negative regulation of cell differentiation	IEP	Neighborhood
MF	GO:0046593	mandelonitrile lyase activity	IEP	Neighborhood
BP	GO:0048229	gametophyte development	IEP	Neighborhood
BP	GO:0048316	seed development	IEP	Neighborhood
BP	GO:0048366	leaf development	IEP	Neighborhood
BP	GO:0048367	shoot system development	IEP	Neighborhood
BP	GO:0048437	floral organ development	IEP	Neighborhood
BP	GO:0048440	carpel development	IEP	Neighborhood
BP	GO:0048441	petal development	IEP	Neighborhood
BP	GO:0048443	stamen development	IEP	Neighborhood
BP	GO:0048446	petal morphogenesis	IEP	Neighborhood
BP	GO:0048449	floral organ formation	IEP	Neighborhood
BP	GO:0048451	petal formation	IEP	Neighborhood
BP	GO:0048453	sepal formation	IEP	Neighborhood
BP	GO:0048462	carpel formation	IEP	Neighborhood
BP	GO:0048497	maintenance of floral organ identity	IEP	Neighborhood
BP	GO:0048507	meristem development	IEP	Neighborhood
BP	GO:0048580	regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood
BP	GO:0048825	cotyledon development	IEP	Neighborhood
BP	GO:0048827	phyllome development	IEP	Neighborhood
BP	GO:0048829	root cap development	IEP	Neighborhood
BP	GO:0048831	regulation of shoot system development	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051239	regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051301	cell division	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
MF	GO:0070001	aspartic-type peptidase activity	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0080051	cutin transport	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:0080154	regulation of fertilization	IEP	Neighborhood
BP	GO:0080155	regulation of double fertilization forming a zygote and endosperm	IEP	Neighborhood
BP	GO:0080172	petal epidermis patterning	IEP	Neighborhood
BP	GO:0090567	reproductive shoot system development	IEP	Neighborhood
BP	GO:0090626	plant epidermis morphogenesis	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
BP	GO:0090700	maintenance of plant organ identity	IEP	Neighborhood
BP	GO:0090701	specification of plant organ identity	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
BP	GO:1900376	regulation of secondary metabolite biosynthetic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
BP	GO:2000026	regulation of multicellular organismal development	IEP	Neighborhood
BP	GO:2000029	regulation of proanthocyanidin biosynthetic process	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2000241	regulation of reproductive process	IEP	Neighborhood
BP	GO:2000762	regulation of phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006780	YABBY	18	181

External Links

No external refs found!

AT1G23420 (INO)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation