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  5. MA_175522g0010

MA_175522g0010


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_175522g0010
Cluster HCCA: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00217560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00001p00270400 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00002p00262760 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00025p00244880 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00071p00198520 evm_27.TU.AmTr_v1... Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.04 Archaeplastida
AT1G77950 AGL67 AGAMOUS-like 67 0.03 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.04 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.04 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
GSVIVT01008140001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01009815001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01019883001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os01g10504.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os02g36924.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os03g03100.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g11330.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.02 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_101463g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10256834g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.03 Archaeplastida
MA_133455g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_138440g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_141872g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_333471g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_35712g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.03 Archaeplastida
MA_78010g0010 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
MA_7858089g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_95674g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
MA_9972589g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c4_540V3.1 No alias K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
Pp3c9_1370V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc02g089200.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc03g006830.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc03g114840.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc04g076280.4.1 No alias MADS-box protein SVP OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc04g078300.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc07g055920.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc11g005120.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e011470_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e018993_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e021861_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!