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  5. AT1G23890

AT1G23890


Description : NHL domain-containing protein


Gene families : OG0002322 (Archaeplastida) Phylogenetic Tree(s): OG0002322_tree ,
OG_05_0001657 (LandPlants) Phylogenetic Tree(s): OG_05_0001657_tree ,
OG_06_0011509 (SeedPlants) Phylogenetic Tree(s): OG_06_0011509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G23890
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Zm00001e004222_P003 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000280 nuclear division IEP Neighborhood
BP GO:0000374 Group III intron splicing IEP Neighborhood
BP GO:0000706 meiotic DNA double-strand break processing IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
BP GO:0000726 non-recombinational repair IEP Neighborhood
BP GO:0000729 DNA double-strand break processing IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005838 proteasome regulatory particle IEP Neighborhood
CC GO:0005851 eukaryotic translation initiation factor 2B complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006446 regulation of translational initiation IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007006 mitochondrial membrane organization IEP Neighborhood
BP GO:0007007 inner mitochondrial membrane organization IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007140 male meiotic nuclear division IEP Neighborhood
BP GO:0007143 female meiotic nuclear division IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010332 response to gamma radiation IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016233 telomere capping IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0017148 negative regulation of translation IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034086 maintenance of sister chromatid cohesion IEP Neighborhood
BP GO:0034090 maintenance of meiotic sister chromatid cohesion IEP Neighborhood
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043047 single-stranded telomeric DNA binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045039 protein import into mitochondrial inner membrane IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0045947 negative regulation of translational initiation IEP Neighborhood
BP GO:0048285 organelle fission IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:0098847 sequence-specific single stranded DNA binding IEP Neighborhood
BP GO:0140013 meiotic nuclear division IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001258 NHL_repeat 100 126
No external refs found!