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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG0008311 (Archaeplastida) Phylogenetic Tree(s): OG0008311_tree ,
OG_05_0007188 (LandPlants) Phylogenetic Tree(s): OG_05_0007188_tree ,
OG_06_0007441 (SeedPlants) Phylogenetic Tree(s): OG_06_0007441_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT5G39980 | |
| Cluster | HCCA: Cluster_135 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Solyc02g087560.1.1 | No alias | Pentatricopeptide repeat-containing protein At5g39980,... | 0.03 | Archaeplastida | |
| Zm00001e019387_P001 | No alias | Pentatricopeptide repeat-containing protein At5g39980,... | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005739 | mitochondrion | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004516 | nicotinate phosphoribosyltransferase activity | IEP | Neighborhood |
| BP | GO:0006405 | RNA export from nucleus | IEP | Neighborhood |
| BP | GO:0006406 | mRNA export from nucleus | IEP | Neighborhood |
| BP | GO:0007275 | multicellular organism development | IEP | Neighborhood |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
| CC | GO:0009528 | plastid inner membrane | IEP | Neighborhood |
| CC | GO:0009706 | chloroplast inner membrane | IEP | Neighborhood |
| BP | GO:0009790 | embryo development | IEP | Neighborhood |
| BP | GO:0009793 | embryo development ending in seed dormancy | IEP | Neighborhood |
| BP | GO:0010020 | chloroplast fission | IEP | Neighborhood |
| BP | GO:0010267 | production of ta-siRNAs involved in RNA interference | IEP | Neighborhood |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Neighborhood |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Neighborhood |
| BP | GO:0019357 | nicotinate nucleotide biosynthetic process | IEP | Neighborhood |
| BP | GO:0019358 | nicotinate nucleotide salvage | IEP | Neighborhood |
| BP | GO:0019365 | pyridine nucleotide salvage | IEP | Neighborhood |
| CC | GO:0031969 | chloroplast membrane | IEP | Neighborhood |
| CC | GO:0042170 | plastid membrane | IEP | Neighborhood |
| BP | GO:0043173 | nucleotide salvage | IEP | Neighborhood |
| BP | GO:0043572 | plastid fission | IEP | Neighborhood |
| BP | GO:0046497 | nicotinate nucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0048285 | organelle fission | IEP | Neighborhood |
| BP | GO:0050657 | nucleic acid transport | IEP | Neighborhood |
| BP | GO:0050658 | RNA transport | IEP | Neighborhood |
| BP | GO:0051028 | mRNA transport | IEP | Neighborhood |
| BP | GO:0051168 | nuclear export | IEP | Neighborhood |
| BP | GO:0051236 | establishment of RNA localization | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 399 | 442 |
| IPR002885 | Pentatricopeptide_repeat | 258 | 303 |
| IPR002885 | Pentatricopeptide_repeat | 153 | 201 |
| IPR002885 | Pentatricopeptide_repeat | 577 | 602 |
| IPR002885 | Pentatricopeptide_repeat | 538 | 566 |
| IPR002885 | Pentatricopeptide_repeat | 471 | 497 |
| IPR002885 | Pentatricopeptide_repeat | 226 | 256 |
| IPR002885 | Pentatricopeptide_repeat | 328 | 377 |
| No external refs found! |