AT5G40460

Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Gene families : OG0001645 (Archaeplastida) Phylogenetic Tree(s): OG0001645_tree ,
OG_05_0001062 (LandPlants) Phylogenetic Tree(s): OG_05_0001062_tree ,
OG_06_0001252 (SeedPlants) Phylogenetic Tree(s): OG_06_0001252_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G40460
Cluster	HCCA: Cluster_77

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pp3c20_3140V3.1	No alias	No annotation	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	ND	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009694	jasmonic acid metabolic process	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009753	response to jasmonic acid	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000311	plastid large ribosomal subunit	IEP	Neighborhood
CC	GO:0000315	organellar large ribosomal subunit	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Neighborhood
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Neighborhood
CC	GO:0009539	photosystem II reaction center	IEP	Neighborhood
BP	GO:0009765	photosynthesis, light harvesting	IEP	Neighborhood
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	Neighborhood
BP	GO:0009875	pollen-pistil interaction	IEP	Neighborhood
BP	GO:0010042	response to manganese ion	IEP	Neighborhood
BP	GO:0010045	response to nickel cation	IEP	Neighborhood
BP	GO:0010207	photosystem II assembly	IEP	Neighborhood
BP	GO:0010337	regulation of salicylic acid metabolic process	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
MF	GO:0016168	chlorophyll binding	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019684	photosynthesis, light reaction	IEP	Neighborhood
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
CC	GO:0034357	photosynthetic membrane	IEP	Neighborhood
BP	GO:0034605	cellular response to heat	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0042651	thylakoid membrane	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
CC	GO:0044445	cytosolic part	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0048038	quinone binding	IEP	Neighborhood
BP	GO:0048530	fruit morphogenesis	IEP	Neighborhood
CC	GO:0055035	plastid thylakoid membrane	IEP	Neighborhood
BP	GO:0070417	cellular response to cold	IEP	Neighborhood
BP	GO:0071472	cellular response to salt stress	IEP	Neighborhood
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IEP	Neighborhood
BP	GO:0080060	integument development	IEP	Neighborhood
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	Neighborhood
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G40460

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation