AT5G41790 (CIP1)

Aliases : CIP1

Description : COP1-interactive protein 1

Gene families : OG0017629 (Archaeplastida) Phylogenetic Tree(s): OG0017629_tree ,
OG_05_0017406 (LandPlants) Phylogenetic Tree(s): OG_05_0017406_tree ,
OG_06_0016937 (SeedPlants) Phylogenetic Tree(s): OG_06_0016937_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G41790
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01019499001	No alias	COP1-interactive protein 1 OS=Arabidopsis thaliana	0.05	Archaeplastida
Solyc08g082010.3.1	No alias	COP1-interactive protein 1 OS=Arabidopsis thaliana...	0.03	Archaeplastida

GO:0044424

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005856	cytoskeleton	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0032386	regulation of intracellular transport	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
BP	GO:0033157	regulation of intracellular protein transport	None	Extended
BP	GO:0042306	regulation of protein import into nucleus	TAS	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC		intracellular part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046822	regulation of nucleocytoplasmic transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051223	regulation of protein transport	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070201	regulation of establishment of protein localization	None	Extended
BP	GO:0090087	regulation of peptide transport	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended
BP	GO:1900180	regulation of protein localization to nucleus	None	Extended
BP	GO:1903827	regulation of cellular protein localization	None	Extended
BP	GO:1904589	regulation of protein import	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
CC	GO:0000325	plant-type vacuole	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0004673	protein histidine kinase activity	IEP	Neighborhood
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Neighborhood
MF	GO:0005034	osmosensor activity	IEP	Neighborhood
MF	GO:0005217	intracellular ligand-gated ion channel activity	IEP	Neighborhood
MF	GO:0005261	cation channel activity	IEP	Neighborhood
MF	GO:0005262	calcium channel activity	IEP	Neighborhood
CC	GO:0005652	nuclear lamina	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006816	calcium ion transport	IEP	Neighborhood
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Neighborhood
BP	GO:0006997	nucleus organization	IEP	Neighborhood
BP	GO:0007602	phototransduction	IEP	Neighborhood
MF	GO:0008066	glutamate receptor activity	IEP	Neighborhood
BP	GO:0008153	para-aminobenzoic acid biosynthetic process	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
MF	GO:0008553	proton-exporting ATPase activity, phosphorylative mechanism	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0009414	response to water deprivation	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
BP	GO:0009581	detection of external stimulus	IEP	Neighborhood
BP	GO:0009582	detection of abiotic stimulus	IEP	Neighborhood
BP	GO:0009583	detection of light stimulus	IEP	Neighborhood
BP	GO:0009585	red, far-red light phototransduction	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009629	response to gravity	IEP	Neighborhood
BP	GO:0009630	gravitropism	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009816	defense response to bacterium, incompatible interaction	IEP	Neighborhood
MF	GO:0009927	histidine phosphotransfer kinase activity	IEP	Neighborhood
BP	GO:0009958	positive gravitropism	IEP	Neighborhood
BP	GO:0010017	red or far-red light signaling pathway	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010099	regulation of photomorphogenesis	IEP	Neighborhood
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	Neighborhood
BP	GO:0010119	regulation of stomatal movement	IEP	Neighborhood
BP	GO:0010191	mucilage metabolic process	IEP	Neighborhood
BP	GO:0010192	mucilage biosynthetic process	IEP	Neighborhood
BP	GO:0010243	response to organonitrogen compound	IEP	Neighborhood
BP	GO:0010311	lateral root formation	IEP	Neighborhood
BP	GO:0010375	stomatal complex patterning	IEP	Neighborhood
BP	GO:0010431	seed maturation	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015276	ligand-gated ion channel activity	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015662	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	IEP	Neighborhood
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Neighborhood
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Neighborhood
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Neighborhood
MF	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0019829	cation-transporting ATPase activity	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022834	ligand-gated channel activity	IEP	Neighborhood
MF	GO:0022836	gated channel activity	IEP	Neighborhood
MF	GO:0022839	ion gated channel activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
CC	GO:0034399	nuclear periphery	IEP	Neighborhood
MF	GO:0036442	proton-exporting ATPase activity	IEP	Neighborhood
MF	GO:0038023	signaling receptor activity	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
BP	GO:0042946	glucoside transport	IEP	Neighborhood
MF	GO:0042947	glucoside transmembrane transporter activity	IEP	Neighborhood
BP	GO:0043200	response to amino acid	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
BP	GO:0046417	chorismate metabolic process	IEP	Neighborhood
BP	GO:0046482	para-aminobenzoic acid metabolic process	IEP	Neighborhood
BP	GO:0046655	folic acid metabolic process	IEP	Neighborhood
BP	GO:0046656	folic acid biosynthetic process	IEP	Neighborhood
MF	GO:0046820	4-amino-4-deoxychorismate synthase activity	IEP	Neighborhood
BP	GO:0048572	short-day photoperiodism	IEP	Neighborhood
BP	GO:0048575	short-day photoperiodism, flowering	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0055074	calcium ion homeostasis	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
MF	GO:0060089	molecular transducer activity	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0070838	divalent metal ion transport	IEP	Neighborhood
BP	GO:0071230	cellular response to amino acid stimulus	IEP	Neighborhood
BP	GO:0071417	cellular response to organonitrogen compound	IEP	Neighborhood
BP	GO:0071489	cellular response to red or far red light	IEP	Neighborhood
BP	GO:0071495	cellular response to endogenous stimulus	IEP	Neighborhood
BP	GO:0072503	cellular divalent inorganic cation homeostasis	IEP	Neighborhood
BP	GO:0072507	divalent inorganic cation homeostasis	IEP	Neighborhood
BP	GO:0072511	divalent inorganic cation transport	IEP	Neighborhood
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Neighborhood
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Neighborhood
BP	GO:1901264	carbohydrate derivative transport	IEP	Neighborhood
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901656	glycoside transport	IEP	Neighborhood
BP	GO:1901699	cellular response to nitrogen compound	IEP	Neighborhood
MF	GO:1902417	(+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	IEP	Neighborhood
BP	GO:1902418	(+)-abscisic acid D-glucopyranosyl ester transmembrane transport	IEP	Neighborhood
BP	GO:1902600	proton transmembrane transport	IEP	Neighborhood
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Neighborhood
BP	GO:2000030	regulation of response to red or far red light	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011684	NAB	14	78

External Links

No external refs found!

AT5G41790 (CIP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation