AT5G42140

Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

Gene families : OG0000543 (Archaeplastida) Phylogenetic Tree(s): OG0000543_tree ,
OG_05_0000407 (LandPlants) Phylogenetic Tree(s): OG_05_0000407_tree ,
OG_06_0000284 (SeedPlants) Phylogenetic Tree(s): OG_06_0000284_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G42140
Cluster	HCCA: Cluster_192

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00256680	evm_27.TU.AmTr_v1...	PH, RCC1 and FYVE domains-containing protein 1...	0.03	Archaeplastida
Smo112120	No alias	PH, RCC1 and FYVE domains-containing protein 1...	0.03	Archaeplastida
Zm00001e007456_P003	No alias	PH, RCC1 and FYVE domains-containing protein 1...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0007165	signal transduction	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
MF	GO:0008289	lipid binding	None	Extended
MF	GO:0008536	Ran GTPase binding	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017016	Ras GTPase binding	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0031267	small GTPase binding	None	Extended
MF	GO:0035091	phosphatidylinositol binding	ISS	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0065007	biological regulation	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	Neighborhood
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
BP	GO:0002218	activation of innate immune response	IEP	Neighborhood
BP	GO:0002253	activation of immune response	IEP	Neighborhood
BP	GO:0002684	positive regulation of immune system process	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Neighborhood
MF	GO:0004930	G-protein coupled receptor activity	IEP	Neighborhood
CC	GO:0005635	nuclear envelope	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006278	RNA-dependent DNA biosynthetic process	IEP	Neighborhood
BP	GO:0006405	RNA export from nucleus	IEP	Neighborhood
BP	GO:0006406	mRNA export from nucleus	IEP	Neighborhood
BP	GO:0006862	nucleotide transport	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0006997	nucleus organization	IEP	Neighborhood
BP	GO:0007009	plasma membrane organization	IEP	Neighborhood
MF	GO:0008020	G-protein coupled photoreceptor activity	IEP	Neighborhood
BP	GO:0009555	pollen development	IEP	Neighborhood
BP	GO:0009556	microsporogenesis	IEP	Neighborhood
BP	GO:0009870	defense response signaling pathway, resistance gene-dependent	IEP	Neighborhood
MF	GO:0009881	photoreceptor activity	IEP	Neighborhood
MF	GO:0009883	red or far-red light photoreceptor activity	IEP	Neighborhood
BP	GO:0010017	red or far-red light signaling pathway	IEP	Neighborhood
BP	GO:0010072	primary shoot apical meristem specification	IEP	Neighborhood
BP	GO:0010150	leaf senescence	IEP	Neighborhood
BP	GO:0010155	regulation of proton transport	IEP	Neighborhood
BP	GO:0015696	ammonium transport	IEP	Neighborhood
BP	GO:0015748	organophosphate ester transport	IEP	Neighborhood
BP	GO:0015802	basic amino acid transport	IEP	Neighborhood
BP	GO:0015931	nucleobase-containing compound transport	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Neighborhood
BP	GO:0031349	positive regulation of defense response	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0033037	polysaccharide localization	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0034293	sexual sporulation	IEP	Neighborhood
CC	GO:0034399	nuclear periphery	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0038023	signaling receptor activity	IEP	Neighborhood
BP	GO:0043090	amino acid import	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043269	regulation of ion transport	IEP	Neighborhood
BP	GO:0043934	sporulation	IEP	Neighborhood
BP	GO:0045089	positive regulation of innate immune response	IEP	Neighborhood
BP	GO:0048229	gametophyte development	IEP	Neighborhood
BP	GO:0048236	plant-type sporogenesis	IEP	Neighborhood
BP	GO:0050657	nucleic acid transport	IEP	Neighborhood
BP	GO:0050658	RNA transport	IEP	Neighborhood
BP	GO:0050778	positive regulation of immune response	IEP	Neighborhood
BP	GO:0051028	mRNA transport	IEP	Neighborhood
BP	GO:0051049	regulation of transport	IEP	Neighborhood
BP	GO:0051168	nuclear export	IEP	Neighborhood
BP	GO:0051236	establishment of RNA localization	IEP	Neighborhood
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0051321	meiotic cell cycle	IEP	Neighborhood
BP	GO:0052386	cell wall thickening	IEP	Neighborhood
BP	GO:0052482	defense response by cell wall thickening	IEP	Neighborhood
BP	GO:0052542	defense response by callose deposition	IEP	Neighborhood
BP	GO:0052543	callose deposition in cell wall	IEP	Neighborhood
BP	GO:0052544	defense response by callose deposition in cell wall	IEP	Neighborhood
BP	GO:0052545	callose localization	IEP	Neighborhood
BP	GO:0071478	cellular response to radiation	IEP	Neighborhood
BP	GO:0071482	cellular response to light stimulus	IEP	Neighborhood
BP	GO:0071489	cellular response to red or far red light	IEP	Neighborhood
BP	GO:0071897	DNA biosynthetic process	IEP	Neighborhood
BP	GO:0090421	embryonic meristem initiation	IEP	Neighborhood
BP	GO:0090693	plant organ senescence	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
BP	GO:1904062	regulation of cation transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000306	Znf_FYVE	617	683
IPR013591	Brevis_radix_dom	998	1053
IPR000408	Reg_chr_condens	460	507
IPR000408	Reg_chr_condens	398	446
IPR000408	Reg_chr_condens	512	561
IPR000408	Reg_chr_condens	566	613
IPR000408	Reg_chr_condens	343	394
IPR000408	Reg_chr_condens	291	339
IPR001849	PH_domain	13	118
IPR027988	BRX_N	864	899

External Links

No external refs found!

AT5G42140

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation