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  5. MA_21160g0010

MA_21160g0010


Description : Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana (sp|q9m8m3|pp136_arath : 356.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0009007 (SeedPlants) Phylogenetic Tree(s): OG_06_0009007_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_21160g0010
Cluster HCCA: Cluster_472

Target Alias Description ECC score Gene Family Method Actions
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Gb_08432 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 Archaeplastida
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
Zm00001e026896_P001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 404 432
IPR002885 Pentatricopeptide_repeat 349 381
IPR002885 Pentatricopeptide_repeat 282 329
IPR002885 Pentatricopeptide_repeat 181 208
IPR002885 Pentatricopeptide_repeat 250 276
No external refs found!