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  5. MA_2159g0010

MA_2159g0010


Description : RING-H2 finger protein ATL78 OS=Arabidopsis thaliana (sp|q6nqg7|atl78_arath : 95.9)


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0000216 (SeedPlants) Phylogenetic Tree(s): OG_06_0000216_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_2159g0010
Cluster HCCA: Cluster_395

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00161410 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G49210 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G11110 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G18773 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G20395 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT3G61460 BRH1 brassinosteroid-responsive RING-H2 0.03 Archaeplastida
AT4G35480 RHA3B RING-H2 finger A3B 0.03 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g55110.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g64620.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g49710.1 No alias IDF1 iron uptake IRT1-ubiquitin ligase 0.03 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os06g34880.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os07g06560.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_13397g0010 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_167410g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_289646g0010 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.04 Archaeplastida
MA_373963g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_5170g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_71146g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_7206g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_895676g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Pp3c18_5860V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Smo101273 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g088440.2.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc02g082420.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc06g053640.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc08g008080.1.1 No alias E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.02 Archaeplastida
Solyc08g076830.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc09g089890.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g009487.1.1 No alias RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc11g005280.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e026193_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e032838_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e034829_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036289_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e038229_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0006875 cellular metal ion homeostasis IEP Neighborhood
BP GO:0006879 cellular iron ion homeostasis IEP Neighborhood
MF GO:0008199 ferric iron binding IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
BP GO:0046916 cellular transition metal ion homeostasis IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0055065 metal ion homeostasis IEP Neighborhood
BP GO:0055072 iron ion homeostasis IEP Neighborhood
BP GO:0055076 transition metal ion homeostasis IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0098771 inorganic ion homeostasis IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 90 133
No external refs found!