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  5. AT5G42765

AT5G42765


Description : INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).


Gene families : OG0008643 (Archaeplastida) Phylogenetic Tree(s): OG0008643_tree ,
OG_05_0009426 (LandPlants) Phylogenetic Tree(s): OG_05_0009426_tree ,
OG_06_0010674 (SeedPlants) Phylogenetic Tree(s): OG_06_0010674_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42765
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01009712001 No alias No description available 0.1 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
CC GO:0009579 thylakoid IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004034 aldose 1-epimerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
BP GO:0006012 galactose metabolic process IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006808 regulation of nitrogen utilization IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
CC GO:0009368 endopeptidase Clp complex IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009528 plastid inner membrane IEP Neighborhood
CC GO:0009532 plastid stroma IEP Neighborhood
CC GO:0009543 chloroplast thylakoid lumen IEP Neighborhood
CC GO:0009570 chloroplast stroma IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009668 plastid membrane organization IEP Neighborhood
CC GO:0009706 chloroplast inner membrane IEP Neighborhood
CC GO:0009840 chloroplastic endopeptidase Clp complex IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
CC GO:0009941 chloroplast envelope IEP Neighborhood
BP GO:0010027 thylakoid membrane organization IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016854 racemase and epimerase activity IEP Neighborhood
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0031969 chloroplast membrane IEP Neighborhood
CC GO:0031978 plastid thylakoid lumen IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0040034 regulation of development, heterochronic IEP Neighborhood
BP GO:0042793 plastid transcription IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0045036 protein targeting to chloroplast IEP Neighborhood
BP GO:0045037 protein import into chloroplast stroma IEP Neighborhood
BP GO:0046471 phosphatidylglycerol metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048506 regulation of timing of meristematic phase transition IEP Neighborhood
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072596 establishment of protein localization to chloroplast IEP Neighborhood
BP GO:0072598 protein localization to chloroplast IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!