Description : DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana (sp|q84lk0|msh1_arath : 157.0)

Gene families : OG0005054 (Archaeplastida) Phylogenetic Tree(s): OG0005054_tree ,
OG_05_0004715 (LandPlants) Phylogenetic Tree(s): OG_05_0004715_tree ,
OG_06_0005529 (SeedPlants) Phylogenetic Tree(s): OG_06_0005529_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: MA_227091g0010
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AT3G24320 CHM, MSH1, ATMSH1, CHM1 MUTL protein homolog 1 0.03 Archaeplastida
Solyc09g090870.3.1 No alias MSH1 genome stability maintenance factor 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0043138 3'-5' DNA helicase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 88 149
No external refs found!