AT5G43460

Description : HR-like lesion-inducing protein-related

Gene families : OG0001776 (Archaeplastida) Phylogenetic Tree(s): OG0001776_tree ,
OG_05_0001771 (LandPlants) Phylogenetic Tree(s): OG_05_0001771_tree ,
OG_06_0002113 (SeedPlants) Phylogenetic Tree(s): OG_06_0002113_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G43460
Cluster	HCCA: Cluster_386

Target	Alias	Description	ECC score	Gene Family Method
Smo169212	No alias	No description available	0.03	Archaeplastida
Smo85994	No alias	No description available	0.04	Archaeplastida
Zm00001e040580_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000354	cis assembly of pre-catalytic spliceosome	IEP	Neighborhood
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005654	nucleoplasm	IEP	Neighborhood
CC	GO:0005686	U2 snRNP	IEP	Neighborhood
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Neighborhood
BP	GO:0006366	transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0009648	photoperiodism	IEP	Neighborhood
BP	GO:0009832	plant-type cell wall biogenesis	IEP	Neighborhood
CC	GO:0015030	Cajal body	IEP	Neighborhood
CC	GO:0016604	nuclear body	IEP	Neighborhood
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Neighborhood
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Neighborhood
MF	GO:0030674	protein binding, bridging	IEP	Neighborhood
BP	GO:0035265	organ growth	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
BP	GO:0048573	photoperiodism, flowering	IEP	Neighborhood
MF	GO:0060090	molecular adaptor activity	IEP	Neighborhood
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Neighborhood
CC	GO:0097525	spliceosomal snRNP complex	IEP	Neighborhood
CC	GO:0120114	Sm-like protein family complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR008637	HR_lesion	1	134

External Links

No external refs found!