MA_312413g0010


Description : recombinase (RecA)


Gene families : OG0002761 (Archaeplastida) Phylogenetic Tree(s): OG0002761_tree ,
OG_05_0007166 (LandPlants) Phylogenetic Tree(s): OG_05_0007166_tree ,
OG_06_0006802 (SeedPlants) Phylogenetic Tree(s): OG_06_0006802_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_312413g0010
Cluster HCCA: Cluster_522

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01015188001 No alias Cell cycle.organelle machineries.DNA replication.genome... 0.05 Archaeplastida
LOC_Os01g67510.1 No alias recombinase (RecA) 0.04 Archaeplastida
Solyc05g055780.4.1 No alias recombinase (RecA) 0.03 Archaeplastida
Zm00001e028552_P001 No alias recombinase (RecA) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005049 nuclear export signal receptor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013765 DNA_recomb/repair_RecA 11 194
No external refs found!