Description : recombinase (RecA)
Gene families : OG0002761 (Archaeplastida) Phylogenetic Tree(s): OG0002761_tree ,
OG_05_0007166 (LandPlants) Phylogenetic Tree(s): OG_05_0007166_tree ,
OG_06_0006802 (SeedPlants) Phylogenetic Tree(s): OG_06_0006802_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_312413g0010 | |
Cluster | HCCA: Cluster_522 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GSVIVT01015188001 | No alias | Cell cycle.organelle machineries.DNA replication.genome... | 0.05 | Archaeplastida | |
LOC_Os01g67510.1 | No alias | recombinase (RecA) | 0.04 | Archaeplastida | |
Solyc05g055780.4.1 | No alias | recombinase (RecA) | 0.03 | Archaeplastida | |
Zm00001e028552_P001 | No alias | recombinase (RecA) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003697 | single-stranded DNA binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006281 | DNA repair | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0005049 | nuclear export signal receptor activity | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
BP | GO:0006260 | DNA replication | IEP | Neighborhood |
BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
BP | GO:0006298 | mismatch repair | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006413 | translational initiation | IEP | Neighborhood |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
CC | GO:0017053 | transcriptional repressor complex | IEP | Neighborhood |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
CC | GO:0030684 | preribosome | IEP | Neighborhood |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Neighborhood |
MF | GO:0030983 | mismatched DNA binding | IEP | Neighborhood |
MF | GO:0031369 | translation initiation factor binding | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:0140104 | molecular carrier activity | IEP | Neighborhood |
MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR013765 | DNA_recomb/repair_RecA | 11 | 194 |
No external refs found! |