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Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT5G46440 | |
| Cluster | HCCA: Cluster_244 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00439p00010860 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g34400... | 0.03 | Archaeplastida | |
| AT4G14170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
| AT5G46460 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Archaeplastida | |
| GSVIVT01035761001 | No alias | Pentatricopeptide repeat-containing protein At2g20540... | 0.05 | Archaeplastida | |
| LOC_Os04g58980.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
| MA_153011g0010 | No alias | RNA editing factor (MEF1) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006071 | glycerol metabolic process | IEP | Neighborhood |
| BP | GO:0006950 | response to stress | IEP | Neighborhood |
| BP | GO:0006952 | defense response | IEP | Neighborhood |
| MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Neighborhood |
| MF | GO:0008889 | glycerophosphodiester phosphodiesterase activity | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016556 | mRNA modification | IEP | Neighborhood |
| MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | Neighborhood |
| MF | GO:0016841 | ammonia-lyase activity | IEP | Neighborhood |
| BP | GO:0019400 | alditol metabolic process | IEP | Neighborhood |
| MF | GO:0045548 | phenylalanine ammonia-lyase activity | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |