AT1G24620

Description : EF hand calcium-binding protein family

Gene families : OG0000031 (Archaeplastida) Phylogenetic Tree(s): OG0000031_tree ,
OG_05_0000085 (LandPlants) Phylogenetic Tree(s): OG_05_0000085_tree ,
OG_06_0000352 (SeedPlants) Phylogenetic Tree(s): OG_06_0000352_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G24620
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00031740	evm_27.TU.AmTr_v1...	Probable calcium-binding protein CML7 OS=Oryza sativa...	0.02	Archaeplastida
Cpa\|evm.model.tig00021435.46	No alias	No description available	0.02	Archaeplastida
Cre11.g468450	No alias	RNA processing.messenger ribonucleoprotein particle...	0.02	Archaeplastida
GSVIVT01018070001	No alias	Calmodulin-like protein 11 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_30717	No alias	Calmodulin OS=Hordeum vulgare (sp\|p62162\|calm_horvu : 292.0)	0.03	Archaeplastida
Gb_30819	No alias	Calmodulin-like protein 5 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os02g39380.1	No alias	Probable calcium-binding protein CML17 OS=Oryza sativa...	0.08	Archaeplastida
LOC_Os05g41210.1	No alias	Calmodulin-related protein OS=Petunia hybrida...	0.03	Archaeplastida
LOC_Os12g12730.1	No alias	Probable calcium-binding protein CML28 OS=Oryza sativa...	0.02	Archaeplastida
MA_1190858g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_18054g0010	No alias	Probable calcium-binding protein CML32 OS=Oryza sativa...	0.03	Archaeplastida
MA_224196g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_51891g0010	No alias	Probable calcium-binding protein CML10 OS=Oryza sativa...	0.02	Archaeplastida
Mp1g00920.1	No alias	Calmodulin-related protein OS=Petunia hybrida...	0.03	Archaeplastida
Pp3c12_6548V3.1	No alias	EF hand calcium-binding protein family	0.03	Archaeplastida
Pp3c6_23740V3.1	No alias	calmodulin like 23	0.02	Archaeplastida
Solyc02g067220.4.1	No alias	no description available(sp\|q93z27\|cml46_arath : 83.2)	0.03	Archaeplastida
Solyc04g008000.3.1	No alias	Probable calcium-binding protein CML25 OS=Arabidopsis...	0.05	Archaeplastida
Solyc06g150132.1.1	No alias	Calmodulin-like protein 3 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Solyc09g055880.1.1	No alias	Calmodulin-like protein 3 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Zm00001e017290_P001	No alias	Calmodulin-related protein OS=Petunia hybrida...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048767	root hair elongation	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048868	pollen tube development	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Neighborhood
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Neighborhood
MF	GO:0003785	actin monomer binding	IEP	Neighborhood
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	Neighborhood
MF	GO:0005200	structural constituent of cytoskeleton	IEP	Neighborhood
MF	GO:0005484	SNAP receptor activity	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Neighborhood
BP	GO:0006928	movement of cell or subcellular component	IEP	Neighborhood
BP	GO:0006949	syncytium formation	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
MF	GO:0008120	ceramide glucosyltransferase activity	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009827	plant-type cell wall modification	IEP	Neighborhood
BP	GO:0009860	pollen tube growth	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	Neighborhood
MF	GO:0015175	neutral amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015193	L-proline transmembrane transporter activity	IEP	Neighborhood
CC	GO:0015629	actin cytoskeleton	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
BP	GO:0030029	actin filament-based process	IEP	Neighborhood
BP	GO:0030036	actin cytoskeleton organization	IEP	Neighborhood
BP	GO:0030048	actin filament-based movement	IEP	Neighborhood
CC	GO:0030139	endocytic vesicle	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
CC	GO:0042995	cell projection	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0048278	vesicle docking	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0060284	regulation of cell development	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0080092	regulation of pollen tube growth	IEP	Neighborhood
CC	GO:0090406	pollen tube	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
CC	GO:0120025	plasma membrane bounded cell projection	IEP	Neighborhood
BP	GO:0140029	exocytic process	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002048	EF_hand_dom	37	96
IPR002048	EF_hand_dom	109	171

External Links

No external refs found!

AT1G24620

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation