AT5G47290

Description : myb family transcription factor

Gene families : OG0000067 (Archaeplastida) Phylogenetic Tree(s): OG0000067_tree ,
OG_05_0048387 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0043298 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G47290
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00096080	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
AT1G19510	RL5, RSM4, ATRL5	RAD-like 5	0.06	Archaeplastida
AT3G10580	No alias	Homeodomain-like superfamily protein	0.06	Archaeplastida
AT3G10585	No alias	Homeodomain-like superfamily protein	0.03	Archaeplastida
AT3G10590	No alias	Duplicated homeodomain-like superfamily protein	0.05	Archaeplastida
AT4G09450	No alias	Duplicated homeodomain-like superfamily protein	0.04	Archaeplastida
AT4G36570	ATRL3, RL3	RAD-like 3	0.04	Archaeplastida
AT5G01200	No alias	Duplicated homeodomain-like superfamily protein	0.04	Archaeplastida
AT5G23650	No alias	Homeodomain-like transcriptional regulator	0.06	Archaeplastida
Cpa\|evm.model.tig00000455.6	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.01	Archaeplastida
MA_16729g0010	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
MA_413315g0010	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
MA_41803g0010	No alias	transcription factor (MYB-related)	0.03	Archaeplastida
MA_957399g0010	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
Solyc03g113620.3.1	No alias	transcription factor (MYB-related)	0.03	Archaeplastida
Solyc04g080500.3.1	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
Zm00001e019254_P001	No alias	transcription factor (MYB-related)	0.02	Archaeplastida
Zm00001e020633_P001	No alias	transcription factor (MYB-related)	0.04	Archaeplastida
Zm00001e028729_P001	No alias	transcription factor (MYB-related)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004708	MAP kinase kinase activity	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006863	purine nucleobase transport	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010528	regulation of transposition	IEP	Neighborhood
BP	GO:0010529	negative regulation of transposition	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
BP	GO:0015851	nucleobase transport	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
BP	GO:0019499	cyanide metabolic process	IEP	Neighborhood
BP	GO:0031056	regulation of histone modification	IEP	Neighborhood
BP	GO:0031057	negative regulation of histone modification	IEP	Neighborhood
BP	GO:0031058	positive regulation of histone modification	IEP	Neighborhood
BP	GO:0031060	regulation of histone methylation	IEP	Neighborhood
BP	GO:0031062	positive regulation of histone methylation	IEP	Neighborhood
BP	GO:0031401	positive regulation of protein modification process	IEP	Neighborhood
MF	GO:0031490	chromatin DNA binding	IEP	Neighborhood
BP	GO:0035065	regulation of histone acetylation	IEP	Neighborhood
BP	GO:0035067	negative regulation of histone acetylation	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0046202	cyanide biosynthetic process	IEP	Neighborhood
BP	GO:0048229	gametophyte development	IEP	Neighborhood
BP	GO:0048658	anther wall tapetum development	IEP	Neighborhood
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	Neighborhood
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IEP	Neighborhood
BP	GO:0080110	sporopollenin biosynthetic process	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	Neighborhood
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	Neighborhood
BP	GO:1901983	regulation of protein acetylation	IEP	Neighborhood
BP	GO:1901984	negative regulation of protein acetylation	IEP	Neighborhood
BP	GO:1905268	negative regulation of chromatin organization	IEP	Neighborhood
BP	GO:1905269	positive regulation of chromatin organization	IEP	Neighborhood
BP	GO:2000756	regulation of peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:2001251	negative regulation of chromosome organization	IEP	Neighborhood
BP	GO:2001252	positive regulation of chromosome organization	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G47290

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation