AT5G47500


Description : Pectin lyase-like superfamily protein


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0007936 (SeedPlants) Phylogenetic Tree(s): OG_06_0007936_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G47500
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264470 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
AMTR_s00116p00025230 evm_27.TU.AmTr_v1... Probable pectinesterase 8 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01013832001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01018823001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_17798 No alias pectin methylesterase 0.05 Archaeplastida
Gb_27225 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os04g46740.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os05g44600.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10428610g0020 No alias pectin methylesterase 0.04 Archaeplastida
MA_14449g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_20853g0010 No alias pectin methylesterase 0.05 Archaeplastida
Mp3g01170.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c25_760V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_23400V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_1440V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_2010V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Solyc08g078640.3.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Solyc09g091730.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e007306_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e032213_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0009505 plant-type cell wall ISS Interproscan
BP GO:0016572 histone phosphorylation RCA Interproscan
MF GO:0030599 pectinesterase activity ISS Interproscan
Type GO Term Name Evidence Source
MF GO:0000064 L-ornithine transmembrane transporter activity IEP Neighborhood
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0003002 regionalization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005290 L-histidine transmembrane transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0007276 gamete generation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0009786 regulation of asymmetric cell division IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0009913 epidermal cell differentiation IEP Neighborhood
BP GO:0010052 guard cell differentiation IEP Neighborhood
BP GO:0010091 trichome branching IEP Neighborhood
BP GO:0010093 specification of floral organ identity IEP Neighborhood
BP GO:0010229 inflorescence development IEP Neighborhood
BP GO:0010374 stomatal complex development IEP Neighborhood
MF GO:0015173 aromatic amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015174 basic amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015179 L-amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015181 arginine transmembrane transporter activity IEP Neighborhood
MF GO:0015189 L-lysine transmembrane transporter activity IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
CC GO:0019897 extrinsic component of plasma membrane IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0030855 epithelial cell differentiation IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032875 regulation of DNA endoreduplication IEP Neighborhood
CC GO:0033597 mitotic checkpoint complex IEP Neighborhood
BP GO:0042023 DNA endoreduplication IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0044786 cell cycle DNA replication IEP Neighborhood
BP GO:0045168 cell-cell signaling involved in cell fate commitment IEP Neighborhood
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0048629 trichome patterning IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051302 regulation of cell division IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:0090558 plant epidermis development IEP Neighborhood
BP GO:0090701 specification of plant organ identity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901371 regulation of leaf morphogenesis IEP Neighborhood
MF GO:1901474 azole transmembrane transporter activity IEP Neighborhood
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Neighborhood
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
BP GO:1905421 regulation of plant organ morphogenesis IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000024 regulation of leaf development IEP Neighborhood
BP GO:2000025 regulation of leaf formation IEP Neighborhood
BP GO:2000038 regulation of stomatal complex development IEP Neighborhood
BP GO:2000122 negative regulation of stomatal complex development IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 61 353
No external refs found!