AT5G48900

Description : Pectin lyase-like superfamily protein

Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G48900
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00039p00186640	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and degradation.pectate lyase	0.03	Archaeplastida
AMTR_s00039p00189000	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and degradation.pectate lyase	0.04	Archaeplastida
AMTR_s00078p00106380	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and degradation.pectate lyase	0.05	Archaeplastida
AT1G11920	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
AT1G14420	AT59	Pectate lyase family protein	0.04	Archaeplastida
AT3G24670	No alias	Pectin lyase-like superfamily protein	0.06	Archaeplastida
AT3G53190	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT4G22080	RHS14	root hair specific 14	0.05	Archaeplastida
AT4G22090	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G04310	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G09280	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G63180	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida
GSVIVT01000592001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.02	Archaeplastida
GSVIVT01003984001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.04	Archaeplastida
GSVIVT01007582001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.05	Archaeplastida
GSVIVT01008053001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.04	Archaeplastida
GSVIVT01011348001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.05	Archaeplastida
GSVIVT01016209001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.01	Archaeplastida
GSVIVT01020067001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.04	Archaeplastida
GSVIVT01024239001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.06	Archaeplastida
GSVIVT01028548001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.03	Archaeplastida
GSVIVT01029048001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.05	Archaeplastida
Gb_02248	No alias	pectate lyase	0.04	Archaeplastida
LOC_Os02g12300.1	No alias	pectate lyase	0.03	Archaeplastida
LOC_Os04g05050.1	No alias	pectate lyase	0.08	Archaeplastida
LOC_Os06g38510.2	No alias	pectate lyase	0.03	Archaeplastida
LOC_Os10g31910.1	No alias	pectate lyase	0.03	Archaeplastida
MA_101171g0010	No alias	pectate lyase	0.05	Archaeplastida
MA_10205415g0010	No alias	pectate lyase	0.07	Archaeplastida
MA_10353668g0010	No alias	pectate lyase	0.03	Archaeplastida
MA_103716g0010	No alias	pectate lyase	0.03	Archaeplastida
MA_10426822g0020	No alias	pectate lyase	0.05	Archaeplastida
MA_10430145g0030	No alias	pectate lyase	0.04	Archaeplastida
MA_10437227g0010	No alias	pectate lyase	0.02	Archaeplastida
MA_10437227g0020	No alias	pectate lyase	0.04	Archaeplastida
MA_10437227g0030	No alias	pectate lyase	0.03	Archaeplastida
MA_1164682g0010	No alias	pectate lyase	0.03	Archaeplastida
MA_170547g0010	No alias	pectate lyase	0.05	Archaeplastida
MA_203992g0010	No alias	pectate lyase	0.03	Archaeplastida
MA_204440g0010	No alias	Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen...	0.06	Archaeplastida
MA_474372g0010	No alias	pectate lyase	0.01	Archaeplastida
MA_476625g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_52869g0010	No alias	no hits & (original description: none)	0.01	Archaeplastida
MA_62112g0010	No alias	pectate lyase	0.02	Archaeplastida
MA_66914g0010	No alias	pectate lyase	0.05	Archaeplastida
MA_91467g0010	No alias	pectate lyase	0.05	Archaeplastida
MA_91467g0020	No alias	pectate lyase	0.05	Archaeplastida
MA_956526g0010	No alias	pectate lyase	0.04	Archaeplastida
MA_97947g0010	No alias	pectate lyase	0.05	Archaeplastida
Mp8g00770.1	No alias	pectate lyase	0.02	Archaeplastida
Pp3c10_20140V3.1	No alias	Pectin lyase-like superfamily protein	0.07	Archaeplastida
Pp3c14_6710V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c17_16370V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c1_10470V3.1	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida
Pp3c1_33130V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c3_35190V3.1	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
Smo407495	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.06	Archaeplastida
Solyc01g010740.4.1	No alias	pectate lyase	0.02	Archaeplastida
Solyc02g031960.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc02g080910.4.1	No alias	pectate lyase	0.04	Archaeplastida
Solyc02g093580.4.1	No alias	pectate lyase	0.06	Archaeplastida
Solyc03g111690.4.1	No alias	pectate lyase	0.06	Archaeplastida
Solyc03g113150.3.1	No alias	pectate lyase	0.02	Archaeplastida
Solyc05g055510.3.1	No alias	pectate lyase	0.02	Archaeplastida
Solyc06g071840.3.1	No alias	Probable pectate lyase 22 OS=Arabidopsis thaliana...	0.01	Archaeplastida
Solyc06g083580.4.1	No alias	pectate lyase	0.07	Archaeplastida
Solyc09g008380.3.1	No alias	pectate lyase	0.02	Archaeplastida
Solyc09g061890.3.1	No alias	pectate lyase	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0007389	pattern specification process	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008361	regulation of cell size	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009926	auxin polar transport	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010015	root morphogenesis	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016829	lyase activity	ISS	Interproscan
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	ISS	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032535	regulation of cellular component size	None	Extended
BP	GO:0040007	growth	RCA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090066	regulation of anatomical structure size	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000036	acyl carrier activity	IEP	Neighborhood
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0004312	fatty acid synthase activity	IEP	Neighborhood
MF	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	IEP	Neighborhood
MF	GO:0004452	isopentenyl-diphosphate delta-isomerase activity	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
MF	GO:0004860	protein kinase inhibitor activity	IEP	Neighborhood
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	Neighborhood
BP	GO:0006567	threonine catabolic process	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
BP	GO:0006949	syncytium formation	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Neighborhood
CC	GO:0009331	glycerol-3-phosphate dehydrogenase complex	IEP	Neighborhood
BP	GO:0009413	response to flooding	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
CC	GO:0009531	secondary cell wall	IEP	Neighborhood
BP	GO:0009645	response to low light intensity stimulus	IEP	Neighborhood
BP	GO:0009650	UV protection	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009739	response to gibberellin	IEP	Neighborhood
BP	GO:0009751	response to salicylic acid	IEP	Neighborhood
BP	GO:0009753	response to jasmonic acid	IEP	Neighborhood
BP	GO:0009800	cinnamic acid biosynthetic process	IEP	Neighborhood
BP	GO:0009803	cinnamic acid metabolic process	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009827	plant-type cell wall modification	IEP	Neighborhood
BP	GO:0009828	plant-type cell wall loosening	IEP	Neighborhood
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010143	cutin biosynthetic process	IEP	Neighborhood
BP	GO:0010218	response to far red light	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
BP	GO:0010440	stomatal lineage progression	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015140	malate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015556	C4-dicarboxylate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015740	C4-dicarboxylate transport	IEP	Neighborhood
BP	GO:0015743	malate transport	IEP	Neighborhood
BP	GO:0016098	monoterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016099	monoterpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016297	acyl-[acyl-carrier-protein] hydrolase activity	IEP	Neighborhood
MF	GO:0016298	lipase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0016863	intramolecular oxidoreductase activity, transposing C=C bonds	IEP	Neighborhood
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	Neighborhood
MF	GO:0019210	kinase inhibitor activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0022622	root system development	IEP	Neighborhood
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
MF	GO:0034007	S-linalool synthase activity	IEP	Neighborhood
MF	GO:0034768	(E)-beta-ocimene synthase activity	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0042335	cuticle development	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	Neighborhood
BP	GO:0043692	monoterpene metabolic process	IEP	Neighborhood
BP	GO:0043693	monoterpene biosynthetic process	IEP	Neighborhood
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0046246	terpene biosynthetic process	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
MF	GO:0050551	myrcene synthase activity	IEP	Neighborhood
MF	GO:0051192	prosthetic group binding	IEP	Neighborhood
MF	GO:0051287	NAD binding	IEP	Neighborhood
BP	GO:0051513	regulation of monopolar cell growth	IEP	Neighborhood
BP	GO:0052646	alditol phosphate metabolic process	IEP	Neighborhood
MF	GO:0052722	fatty acid in-chain hydroxylase activity	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0071423	malate transmembrane transport	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0080027	response to herbivore	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
BP	GO:1903825	organic acid transmembrane transport	IEP	Neighborhood
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Neighborhood
BP	GO:2000012	regulation of auxin polar transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	151	332

External Links

No external refs found!

AT5G48900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation