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  5. MA_415344g0010

MA_415344g0010


Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana (sp|q84tg3|pub23_arath : 102.0)


Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0000440 (SeedPlants) Phylogenetic Tree(s): OG_06_0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_415344g0010
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00130440 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AMTR_s00030p00159240 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00069p00038840 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00138p00053700 evm_27.TU.AmTr_v1... U-box domain-containing protein 21 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G66160 CMPG1, ATCMPG1 CYS, MET, PRO, and GLY protein 1 0.02 Archaeplastida
AT3G02840 No alias ARM repeat superfamily protein 0.07 Archaeplastida
AT3G52450 PUB22 plant U-box 22 0.05 Archaeplastida
AT5G37490 No alias ARM repeat superfamily protein 0.04 Archaeplastida
AT5G64660 CMPG2, ATCMPG2 CYS, MET, PRO, and GLY protein 2 0.06 Archaeplastida
GSVIVT01011139001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01011140001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01011616001 No alias U-box domain-containing protein 20 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01026542001 No alias U-box domain-containing protein 27 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01031720001 No alias U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_02627 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.02 Archaeplastida
Gb_02629 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.05 Archaeplastida
Gb_16227 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
Gb_16228 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 Archaeplastida
Gb_17119 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.05 Archaeplastida
Gb_19502 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.05 Archaeplastida
Gb_29851 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.05 Archaeplastida
Gb_29938 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os01g64570.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os02g33680.1 No alias U-box domain-containing protein 29 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os02g34410.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os02g50460.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os03g13740.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os04g34030.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os04g49970.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os04g58920.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os06g13870.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os08g04470.1 No alias U-box domain-containing protein 8 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os10g03440.1 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.02 Archaeplastida
MA_10430196g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
MA_1663g0020 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.05 Archaeplastida
MA_17715g0010 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.05 Archaeplastida
MA_200041g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.04 Archaeplastida
MA_209202g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
MA_311559g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.05 Archaeplastida
MA_3784951g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_415393g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
MA_58844g0020 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
MA_61761g0010 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.07 Archaeplastida
MA_698346g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.01 Archaeplastida
MA_779502g0010 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
Mp3g22740.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Mp7g11000.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c10_20630V3.1 No alias plant U-box 22 0.02 Archaeplastida
Pp3c19_3920V3.1 No alias plant U-box 23 0.02 Archaeplastida
Smo104879 No alias U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g005160.4.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.02 Archaeplastida
Solyc01g007000.4.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
Solyc01g007020.4.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g007030.3.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.06 Archaeplastida
Solyc01g007040.4.1 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g007050.3.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g080920.3.1 No alias No annotation 0.02 Archaeplastida
Solyc01g107980.3.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
Solyc04g008100.3.1 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.05 Archaeplastida
Solyc04g071030.1.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Solyc06g074140.1.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.04 Archaeplastida
Solyc11g068920.1.1 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 Archaeplastida
Solyc11g068940.1.1 No alias E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e000999_P001 No alias U-box domain-containing protein 20 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e006484_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e007108_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e008167_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e014752_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e014766_P001 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Zm00001e014779_P001 No alias U-box domain-containing protein 26 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e015763_P001 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e022698_P001 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e036030_P001 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e039417_P001 No alias E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e040854_P001 No alias U-box domain-containing protein 29 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009060 aerobic respiration IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0045333 cellular respiration IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!