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  5. MA_42843g0010

MA_42843g0010


Description : component NOT1 of mRNA deadenylation CCR4-NOT complex


Gene families : OG0003850 (Archaeplastida) Phylogenetic Tree(s): OG0003850_tree ,
OG_05_0004130 (LandPlants) Phylogenetic Tree(s): OG_05_0004130_tree ,
OG_06_0004586 (SeedPlants) Phylogenetic Tree(s): OG_06_0004586_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_42843g0010
Cluster HCCA: Cluster_491

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00133350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.14 Archaeplastida
AT1G02080 No alias transcription regulators 0.25 Archaeplastida
Cpa|evm.model.tig00000767.19 No alias RNA processing.RNA decay.deadenylation-dependent... 0.06 Archaeplastida
Cpa|evm.model.tig00000767.20 No alias No description available 0.02 Archaeplastida
Cre14.g632950 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 Archaeplastida
GSVIVT01000874001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.15 Archaeplastida
GSVIVT01018178001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.05 Archaeplastida
GSVIVT01018721001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.18 Archaeplastida
Gb_12251 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.04 Archaeplastida
LOC_Os10g40780.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.12 Archaeplastida
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.13 Archaeplastida
Pp3c5_6540V3.1 No alias transcription regulators 0.21 Archaeplastida
Smo440060 No alias RNA processing.RNA decay.deadenylation-dependent... 0.12 Archaeplastida
Solyc01g090780.3.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.19 Archaeplastida
Zm00001e000031_P001 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.07 Archaeplastida
Zm00001e039114_P001 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007196 CCR4-Not_Not1_C 1139 1326
IPR032191 CNOT1_CAF1_bind 197 283
IPR024557 CCR4-Not_Not1su_DUF3819 411 551
No external refs found!