AT5G51280

Description : DEAD-box protein abstrakt, putative

Gene families : OG0005247 (Archaeplastida) Phylogenetic Tree(s): OG0005247_tree ,
OG_05_0005375 (LandPlants) Phylogenetic Tree(s): OG_05_0005375_tree ,
OG_06_0006013 (SeedPlants) Phylogenetic Tree(s): OG_06_0006013_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G51280
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
Cre07.g334200	No alias	DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_18686	No alias	DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os02g05660.1	No alias	DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa...	0.03	Archaeplastida
Zm00001e038223_P001	No alias	DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008026	ATP-dependent helicase activity	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048284	organelle fusion	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
MF	GO:0070035	purine NTP-dependent helicase activity	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IEP	Neighborhood
CC	GO:0000502	proteasome complex	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003954	NADH dehydrogenase activity	IEP	Neighborhood
MF	GO:0004407	histone deacetylase activity	IEP	Neighborhood
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Neighborhood
CC	GO:0005635	nuclear envelope	IEP	Neighborhood
CC	GO:0005654	nucleoplasm	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Neighborhood
BP	GO:0006096	glycolytic process	IEP	Neighborhood
BP	GO:0006120	mitochondrial electron transport, NADH to ubiquinone	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006497	protein lipidation	IEP	Neighborhood
BP	GO:0006498	N-terminal protein lipidation	IEP	Neighborhood
BP	GO:0006499	N-terminal protein myristoylation	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006626	protein targeting to mitochondrion	IEP	Neighborhood
BP	GO:0006635	fatty acid beta-oxidation	IEP	Neighborhood
BP	GO:0006754	ATP biosynthetic process	IEP	Neighborhood
BP	GO:0006757	ATP generation from ADP	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006839	mitochondrial transport	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0007160	cell-matrix adhesion	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008131	primary amine oxidase activity	IEP	Neighborhood
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
CC	GO:0008305	integrin complex	IEP	Neighborhood
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	Neighborhood
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009062	fatty acid catabolic process	IEP	Neighborhood
BP	GO:0009108	coenzyme biosynthetic process	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
BP	GO:0009119	ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	Neighborhood
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	Neighborhood
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009166	nucleotide catabolic process	IEP	Neighborhood
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Neighborhood
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	Neighborhood
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	Neighborhood
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Neighborhood
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009404	toxin metabolic process	IEP	Neighborhood
BP	GO:0009407	toxin catabolic process	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009639	response to red or far red light	IEP	Neighborhood
BP	GO:0009640	photomorphogenesis	IEP	Neighborhood
BP	GO:0009651	response to salt stress	IEP	Neighborhood
BP	GO:0009791	post-embryonic development	IEP	Neighborhood
BP	GO:0009853	photorespiration	IEP	Neighborhood
BP	GO:0010038	response to metal ion	IEP	Neighborhood
BP	GO:0010072	primary shoot apical meristem specification	IEP	Neighborhood
BP	GO:0010431	seed maturation	IEP	Neighborhood
BP	GO:0010498	proteasomal protein catabolic process	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
BP	GO:0016052	carbohydrate catabolic process	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
CC	GO:0016604	nuclear body	IEP	Neighborhood
CC	GO:0016607	nuclear speck	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Neighborhood
BP	GO:0018377	protein myristoylation	IEP	Neighborhood
MF	GO:0019213	deacetylase activity	IEP	Neighborhood
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0019395	fatty acid oxidation	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
BP	GO:0022904	respiratory electron transport chain	IEP	Neighborhood
BP	GO:0030163	protein catabolic process	IEP	Neighborhood
BP	GO:0030258	lipid modification	IEP	Neighborhood
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Neighborhood
BP	GO:0031589	cell-substrate adhesion	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
MF	GO:0033558	protein deacetylase activity	IEP	Neighborhood
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Neighborhood
BP	GO:0034440	lipid oxidation	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Neighborhood
CC	GO:0035145	exon-exon junction complex	IEP	Neighborhood
BP	GO:0035510	DNA dealkylation	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0035966	response to topologically incorrect protein	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
BP	GO:0042278	purine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0042325	regulation of phosphorylation	IEP	Neighborhood
BP	GO:0042866	pyruvate biosynthetic process	IEP	Neighborhood
BP	GO:0043094	cellular metabolic compound salvage	IEP	Neighborhood
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043235	receptor complex	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044242	cellular lipid catabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
BP	GO:0046031	ADP metabolic process	IEP	Neighborhood
BP	GO:0046034	ATP metabolic process	IEP	Neighborhood
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0046434	organophosphate catabolic process	IEP	Neighborhood
BP	GO:0046686	response to cadmium ion	IEP	Neighborhood
BP	GO:0046939	nucleotide phosphorylation	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Neighborhood
BP	GO:0051568	histone H3-K4 methylation	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0051788	response to misfolded protein	IEP	Neighborhood
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:0070585	protein localization to mitochondrion	IEP	Neighborhood
BP	GO:0070988	demethylation	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0072521	purine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Neighborhood
BP	GO:0080111	DNA demethylation	IEP	Neighborhood
BP	GO:0080129	proteasome core complex assembly	IEP	Neighborhood
BP	GO:0080180	2-methylguanosine metabolic process	IEP	Neighborhood
BP	GO:0090421	embryonic meristem initiation	IEP	Neighborhood
CC	GO:0098636	protein complex involved in cell adhesion	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
BP	GO:0098754	detoxification	IEP	Neighborhood
CC	GO:0098802	plasma membrane receptor complex	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood
CC	GO:1905369	endopeptidase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	170	347
IPR001878	Znf_CCHC	549	565
IPR001650	Helicase_C	385	492

External Links

No external refs found!

AT5G51280

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation