AT5G51860

Description : K-box region and MADS-box transcription factor family protein

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0025085 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G51860

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01027577001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
LOC_Os02g07430.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g45770.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os04g52410.2	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os12g10540.3	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_95674g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc12g038510.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009909	regulation of flower development	IMP	Interproscan
BP	GO:0010048	vernalization response	RCA	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043473	pigmentation	None	Extended
BP	GO:0043476	pigment accumulation	None	Extended
BP	GO:0043478	pigment accumulation in response to UV light	None	Extended
BP	GO:0043479	pigment accumulation in tissues in response to UV light	None	Extended
BP	GO:0043480	pigment accumulation in tissues	None	Extended
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	RCA	Interproscan
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048440	carpel development	RCA	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	IEP	Neighborhood
MF	GO:0005216	ion channel activity	IEP	Neighborhood
MF	GO:0005244	voltage-gated ion channel activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
BP	GO:0006084	acetyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006637	acyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009061	anaerobic respiration	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Neighborhood
MF	GO:0022832	voltage-gated channel activity	IEP	Neighborhood
MF	GO:0022836	gated channel activity	IEP	Neighborhood
MF	GO:0022839	ion gated channel activity	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0035383	thioester metabolic process	IEP	Neighborhood
BP	GO:0036293	response to decreased oxygen levels	IEP	Neighborhood
BP	GO:0045333	cellular respiration	IEP	Neighborhood
CC	GO:0048471	perinuclear region of cytoplasm	IEP	Neighborhood
BP	GO:0070482	response to oxygen levels	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	89	170
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

AT5G51860

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation