MA_473g0010

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 164.0)

Gene families : OG0000233 (Archaeplastida) Phylogenetic Tree(s): OG0000233_tree ,
OG_05_0001171 (LandPlants) Phylogenetic Tree(s): OG_05_0001171_tree ,
OG_06_0001131 (SeedPlants) Phylogenetic Tree(s): OG_06_0001131_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_473g0010
Cluster	HCCA: Cluster_84

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00200350	evm_27.TU.AmTr_v1...	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.05	Archaeplastida
AMTR_s00065p00083440	evm_27.TU.AmTr_v1...	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00067p00185510	evm_27.TU.AmTr_v1...	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT2G33410	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Archaeplastida
Cpa\|evm.model.tig00001130.27	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01012784001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01028394001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_29426	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
Gb_29428	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.05	Archaeplastida
Gb_32677	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
Gb_33012	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
Gb_35079	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os02g12850.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.05	Archaeplastida
LOC_Os10g33230.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
Pp3c1_33540V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Archaeplastida
Pp3c26_4470V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Archaeplastida
Solyc02g093340.3.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
Solyc03g005680.3.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
Solyc03g121710.2.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
Solyc04g077520.3.1	No alias	RNA-binding protein 1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc07g045240.3.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
Solyc09g090520.3.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.06	Archaeplastida
Zm00001e004612_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e012709_P005	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e014461_P003	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e024336_P003	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e024934_P002	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e030652_P001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e037155_P004	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0045927	positive regulation of growth	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	129	198
IPR000504	RRM_dom	40	107

External Links

No external refs found!

MA_473g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation