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  5. AT5G52610

AT5G52610


Description : F-box and associated interaction domains-containing protein


Gene families : OG0000466 (Archaeplastida) Phylogenetic Tree(s): OG0000466_tree ,
OG_05_0000239 (LandPlants) Phylogenetic Tree(s): OG_05_0000239_tree ,
OG_06_0000111 (SeedPlants) Phylogenetic Tree(s): OG_06_0000111_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G52610
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT1G19160 No alias F-box family protein 0.01 Archaeplastida
AT1G23037 No alias F-box associated ubiquitination effector family protein 0.02 Archaeplastida
AT1G26515 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT1G30780 No alias F-box associated ubiquitination effector family protein 0.05 Archaeplastida
AT1G30790 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT1G30920 No alias F-box family protein 0.09 Archaeplastida
AT1G30925 No alias phospholipase Cs 0.04 Archaeplastida
AT1G30930 No alias F-box family protein 0.04 Archaeplastida
AT1G31080 No alias F-box family protein 0.03 Archaeplastida
AT1G31090 No alias F-box family protein 0.09 Archaeplastida
AT1G31163 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida
AT1G31620 No alias unknown protein; Has 9 Blast hits to 9 proteins in 2... 0.05 Archaeplastida
AT1G32420 No alias F-box and associated interaction domains-containing protein 0.09 Archaeplastida
AT1G32660 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT1G33010 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT1G46840 No alias F-box family protein 0.05 Archaeplastida
AT1G47765 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT1G47790 No alias F-box and associated interaction domains-containing protein 0.02 Archaeplastida
AT1G47800 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT1G47810 No alias F-box and associated interaction domains-containing protein 0.09 Archaeplastida
AT1G48060 No alias F-box and associated interaction domains-containing protein 0.01 Archaeplastida
AT1G50880 No alias F-box and associated interaction domains-containing protein 0.07 Archaeplastida
AT1G52495 No alias No description available 0.01 Archaeplastida
AT1G53360 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida
AT1G53370 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT1G53815 No alias F-box family protein 0.03 Archaeplastida
AT1G59690 No alias F-box associated ubiquitination effector family protein 0.06 Archaeplastida
AT1G60370 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT1G61060 No alias F-box family protein 0.08 Archaeplastida
AT1G67130 No alias F-box family protein 0.07 Archaeplastida
AT1G70380 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT1G70970 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT2G02660 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida
AT2G02890 No alias F-box family protein 0.03 Archaeplastida
AT2G16450 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT2G16810 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT2G23160 No alias F-box family protein 0.06 Archaeplastida
AT2G31470 DOR F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT2G32470 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida
AT2G40910 No alias F-box and associated interaction domains-containing protein 0.01 Archaeplastida
AT3G04660 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT3G10240 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT3G10790 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida
AT3G47140 No alias F-box associated ubiquitination effector family protein 0.05 Archaeplastida
AT3G47150 No alias F-box and associated interaction domains-containing protein 0.01 Archaeplastida
AT3G49440 No alias F-box associated ubiquitination effector family protein 0.01 Archaeplastida
AT3G49450 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT3G52320 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT4G13060 No alias F-box associated ubiquitination effector family protein 0.03 Archaeplastida
AT4G19930 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT4G29970 No alias F-box and associated interaction domains-containing protein 0.07 Archaeplastida
AT5G18160 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT5G42430 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT5G44345 No alias F-box associated ubiquitination effector family protein 0.05 Archaeplastida
AT5G50220 No alias F-box family protein 0.02 Archaeplastida
AT5G52620 No alias F-box associated ubiquitination effector family protein 0.05 Archaeplastida
AT5G62060 No alias F-box and associated interaction domains-containing protein 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003886 DNA (cytosine-5-)-methyltransferase activity IEP Neighborhood
MF GO:0004022 alcohol dehydrogenase (NAD) activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0009008 DNA-methyltransferase activity IEP Neighborhood
MF GO:0009824 AMP dimethylallyltransferase activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0030656 regulation of vitamin metabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0045551 cinnamyl-alcohol dehydrogenase activity IEP Neighborhood
BP GO:0045912 negative regulation of carbohydrate metabolic process IEP Neighborhood
BP GO:0046137 negative regulation of vitamin metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051195 negative regulation of cofactor metabolic process IEP Neighborhood
BP GO:0051196 regulation of coenzyme metabolic process IEP Neighborhood
BP GO:0051198 negative regulation of coenzyme metabolic process IEP Neighborhood
MF GO:0052622 ATP dimethylallyltransferase activity IEP Neighborhood
MF GO:0052623 ADP dimethylallyltransferase activity IEP Neighborhood
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Neighborhood
BP GO:0062014 negative regulation of small molecule metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000032 regulation of secondary shoot formation IEP Neighborhood
BP GO:2000082 regulation of L-ascorbic acid biosynthetic process IEP Neighborhood
BP GO:2000083 negative regulation of L-ascorbic acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 3 37
IPR013187 F-box-assoc_dom_typ3 184 310
No external refs found!