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  5. MA_51694g0010

MA_51694g0010


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 672.0)


Gene families : OG0009320 (Archaeplastida) Phylogenetic Tree(s): OG0009320_tree ,
OG_05_0093484 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0074457 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_51694g0010
Cluster HCCA: Cluster_399

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00126p00080460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
GSVIVT01034707001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_02544 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo114102 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006553 lysine metabolic process IEP Neighborhood
MF GO:0008837 diaminopimelate epimerase activity IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009085 lysine biosynthetic process IEP Neighborhood
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016854 racemase and epimerase activity IEP Neighborhood
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Neighborhood
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0046451 diaminopimelate metabolic process IEP Neighborhood
MF GO:0047661 amino-acid racemase activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 1026 1150
IPR002885 Pentatricopeptide_repeat 723 751
IPR002885 Pentatricopeptide_repeat 827 848
IPR002885 Pentatricopeptide_repeat 459 487
IPR002885 Pentatricopeptide_repeat 268 293
IPR002885 Pentatricopeptide_repeat 563 586
IPR002885 Pentatricopeptide_repeat 994 1022
IPR002885 Pentatricopeptide_repeat 591 620
IPR002885 Pentatricopeptide_repeat 428 455
IPR002885 Pentatricopeptide_repeat 928 951
IPR002885 Pentatricopeptide_repeat 400 425
IPR002885 Pentatricopeptide_repeat 622 647
IPR002885 Pentatricopeptide_repeat 103 138
IPR002885 Pentatricopeptide_repeat 488 535
IPR002885 Pentatricopeptide_repeat 193 240
IPR002885 Pentatricopeptide_repeat 852 901
IPR002885 Pentatricopeptide_repeat 325 372
IPR002885 Pentatricopeptide_repeat 752 797
No external refs found!