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  5. MA_52319g0030

MA_52319g0030


Description : nMAT1/2 type-I mitochondrial RNA splicing factor


Gene families : OG0004888 (Archaeplastida) Phylogenetic Tree(s): OG0004888_tree ,
OG_05_0003570 (LandPlants) Phylogenetic Tree(s): OG_05_0003570_tree ,
OG_06_0003926 (SeedPlants) Phylogenetic Tree(s): OG_06_0003926_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_52319g0030
Cluster HCCA: Cluster_482

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00133420 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00047p00213160 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01023127001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
LOC_Os10g41790.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 Archaeplastida
Pp3c6_21460V3.1 No alias Intron maturase, type II family protein 0.02 Archaeplastida
Solyc08g077385.1.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.04 Archaeplastida
Zm00001e000458_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.02 Archaeplastida
Zm00001e011594_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR024937 Domain_X 504 596
No external refs found!