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  5. AT5G54350

AT5G54350


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G54360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).


Gene families : OG0020938 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0017390 (LandPlants) Phylogenetic Tree(s): OG_05_0017390_tree ,
OG_06_0016920 (SeedPlants) Phylogenetic Tree(s): OG_06_0016920_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G54350
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AT5G54340 No alias C2H2 and C2HC zinc fingers superfamily protein 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004707 MAP kinase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0033612 receptor serine/threonine kinase binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!