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  5. AT5G54640

AT5G54640 (RAT5, HTA1, ATHTA1)


Aliases : RAT5, HTA1, ATHTA1

Description : Histone superfamily protein


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G54640
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AT1G51060 HTA10 histone H2A 10 0.02 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.01 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0009294 DNA mediated transformation IMP Interproscan
BP GO:0009611 response to wounding IEP Interproscan
BP GO:0009617 response to bacterium IEP Interproscan
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Type GO Term Name Evidence Source
CC GO:0005640 nuclear outer membrane IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031965 nuclear membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0048364 root development IEP Neighborhood
BP GO:0048468 cell development IEP Neighborhood
BP GO:0048527 lateral root development IEP Neighborhood
BP GO:0048528 post-embryonic root development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0080147 root hair cell development IEP Neighborhood
BP GO:0090696 post-embryonic plant organ development IEP Neighborhood
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 93 126
IPR007125 Histone_H2A/H2B/H3 13 90
No external refs found!