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  5. AT5G54990

AT5G54990


Description : RING/U-box superfamily protein


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0041591 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G54990
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00043520 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G18760 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 Archaeplastida
AT1G18780 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT1G21960 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT1G50350 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.04 Archaeplastida
AT2G29840 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT2G44330 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT3G13228 No alias RING/U-box superfamily protein 0.05 Archaeplastida
GSVIVT01008897001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
LOC_Os11g05230.1 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_19897g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_816375g0010 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.01 Archaeplastida
Solyc02g065650.1.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
Solyc02g088030.1.1 No alias E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc05g007895.1.1 No alias E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.01 Archaeplastida
Zm00001e019544_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.01 Archaeplastida
Zm00001e024003_P001 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 Archaeplastida
Zm00001e024455_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e038199_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003886 DNA (cytosine-5-)-methyltransferase activity IEP Neighborhood
MF GO:0004022 alcohol dehydrogenase (NAD) activity IEP Neighborhood
MF GO:0009008 DNA-methyltransferase activity IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
MF GO:0015386 potassium:proton antiporter activity IEP Neighborhood
MF GO:0022821 potassium ion antiporter activity IEP Neighborhood
MF GO:0045551 cinnamyl-alcohol dehydrogenase activity IEP Neighborhood
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000032 regulation of secondary shoot formation IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 173 215
No external refs found!