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  5. AT5G55550

AT5G55550


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000233 (Archaeplastida) Phylogenetic Tree(s): OG0000233_tree ,
OG_05_0000415 (LandPlants) Phylogenetic Tree(s): OG_05_0000415_tree ,
OG_06_0025119 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G55550
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001130.27 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre07.g330300 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os06g37000.2 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os08g23120.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
MA_6673211g0010 No alias No annotation 0.02 Archaeplastida
Solyc11g012470.2.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP Neighborhood
BP GO:0001932 regulation of protein phosphorylation IEP Neighborhood
BP GO:0001933 negative regulation of protein phosphorylation IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
BP GO:0005513 detection of calcium ion IEP Neighborhood
CC GO:0005768 endosome IEP Neighborhood
CC GO:0005794 Golgi apparatus IEP Neighborhood
CC GO:0005802 trans-Golgi network IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
CC GO:0005874 microtubule IEP Neighborhood
CC GO:0005881 cytoplasmic microtubule IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006469 negative regulation of protein kinase activity IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006491 N-glycan processing IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0008553 proton-exporting ATPase activity, phosphorylative mechanism IEP Neighborhood
BP GO:0009100 glycoprotein metabolic process IEP Neighborhood
BP GO:0009593 detection of chemical stimulus IEP Neighborhood
CC GO:0009705 plant-type vacuole membrane IEP Neighborhood
BP GO:0009826 unidimensional cell growth IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
BP GO:0010118 stomatal movement IEP Neighborhood
BP GO:0010119 regulation of stomatal movement IEP Neighborhood
BP GO:0010393 galacturonan metabolic process IEP Neighborhood
BP GO:0010563 negative regulation of phosphorus metabolic process IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
MF GO:0015662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
BP GO:0018126 protein hydroxylation IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0019471 4-hydroxyproline metabolic process IEP Neighborhood
BP GO:0019511 peptidyl-proline hydroxylation IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019722 calcium-mediated signaling IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
BP GO:0030865 cortical cytoskeleton organization IEP Neighborhood
BP GO:0031122 cytoplasmic microtubule organization IEP Neighborhood
BP GO:0031400 negative regulation of protein modification process IEP Neighborhood
CC GO:0031410 cytoplasmic vesicle IEP Neighborhood
CC GO:0031982 vesicle IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
BP GO:0032269 negative regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
MF GO:0033549 MAP kinase phosphatase activity IEP Neighborhood
BP GO:0033673 negative regulation of kinase activity IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042325 regulation of phosphorylation IEP Neighborhood
BP GO:0042326 negative regulation of phosphorylation IEP Neighborhood
BP GO:0042732 D-xylose metabolic process IEP Neighborhood
CC GO:0042995 cell projection IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043405 regulation of MAP kinase activity IEP Neighborhood
BP GO:0043407 negative regulation of MAP kinase activity IEP Neighborhood
BP GO:0043408 regulation of MAPK cascade IEP Neighborhood
BP GO:0043409 negative regulation of MAPK cascade IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043549 regulation of kinase activity IEP Neighborhood
BP GO:0043622 cortical microtubule organization IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0045488 pectin metabolic process IEP Neighborhood
BP GO:0045489 pectin biosynthetic process IEP Neighborhood
BP GO:0045859 regulation of protein kinase activity IEP Neighborhood
BP GO:0045936 negative regulation of phosphate metabolic process IEP Neighborhood
BP GO:0046685 response to arsenic-containing substance IEP Neighborhood
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0048868 pollen tube development IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051338 regulation of transferase activity IEP Neighborhood
BP GO:0051348 negative regulation of transferase activity IEP Neighborhood
BP GO:0051592 response to calcium ion IEP Neighborhood
BP GO:0052325 cell wall pectin biosynthetic process IEP Neighborhood
BP GO:0052546 cell wall pectin metabolic process IEP Neighborhood
CC GO:0055028 cortical microtubule IEP Neighborhood
BP GO:0055067 monovalent inorganic cation homeostasis IEP Neighborhood
BP GO:0055075 potassium ion homeostasis IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Neighborhood
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP Neighborhood
CC GO:0090406 pollen tube IEP Neighborhood
CC GO:0097708 intracellular vesicle IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
CC GO:0099080 supramolecular complex IEP Neighborhood
CC GO:0099081 supramolecular polymer IEP Neighborhood
CC GO:0099512 supramolecular fiber IEP Neighborhood
CC GO:0099513 polymeric cytoskeletal fiber IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0120025 plasma membrane bounded cell projection IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
BP GO:1902532 negative regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 75
IPR000504 RRM_dom 112 170
No external refs found!