AT5G55780


Description : Cysteine/Histidine-rich C1 domain family protein


Gene families : OG0001960 (Archaeplastida) Phylogenetic Tree(s): OG0001960_tree ,
OG_05_0001279 (LandPlants) Phylogenetic Tree(s): OG_05_0001279_tree ,
OG_06_0000662 (SeedPlants) Phylogenetic Tree(s): OG_06_0000662_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G55780
Cluster HCCA: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
AT1G34480 No alias Cysteine/Histidine-rich C1 domain family protein 0.04 Archaeplastida
AT1G44020 No alias Cysteine/Histidine-rich C1 domain family protein 0.08 Archaeplastida
AT1G44030 No alias Cysteine/Histidine-rich C1 domain family protein 0.04 Archaeplastida
AT1G44050 No alias Cysteine/Histidine-rich C1 domain family protein 0.08 Archaeplastida
AT1G53340 No alias Cysteine/Histidine-rich C1 domain family protein 0.04 Archaeplastida
AT2G28460 No alias Cysteine/Histidine-rich C1 domain family protein 0.06 Archaeplastida
AT2G40050 No alias Cysteine/Histidine-rich C1 domain family protein 0.03 Archaeplastida
AT3G50010 No alias Cysteine/Histidine-rich C1 domain family protein 0.06 Archaeplastida
AT4G10560 MEE53 Cysteine/Histidine-rich C1 domain family protein 0.05 Archaeplastida
AT4G15070 No alias Cysteine/Histidine-rich C1 domain family protein 0.06 Archaeplastida
AT5G02350 No alias Cysteine/Histidine-rich C1 domain family protein 0.08 Archaeplastida
AT5G48320 No alias Cysteine/Histidine-rich C1 domain family protein 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006863 purine nucleobase transport RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0002218 activation of innate immune response IEP Neighborhood
BP GO:0002253 activation of immune response IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003973 (S)-2-hydroxy-acid oxidase activity IEP Neighborhood
MF GO:0004022 alcohol dehydrogenase (NAD) activity IEP Neighborhood
MF GO:0004040 amidase activity IEP Neighborhood
MF GO:0004683 calmodulin-dependent protein kinase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008891 glycolate oxidase activity IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009743 response to carbohydrate IEP Neighborhood
BP GO:0009744 response to sucrose IEP Neighborhood
BP GO:0009812 flavonoid metabolic process IEP Neighborhood
BP GO:0009813 flavonoid biosynthetic process IEP Neighborhood
BP GO:0009957 epidermal cell fate specification IEP Neighborhood
BP GO:0010091 trichome branching IEP Neighborhood
BP GO:0010204 defense response signaling pathway, resistance gene-independent IEP Neighborhood
BP GO:0010224 response to UV-B IEP Neighborhood
BP GO:0016145 S-glycoside catabolic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0019759 glycosinolate catabolic process IEP Neighborhood
BP GO:0019762 glucosinolate catabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0034285 response to disaccharide IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
MF GO:0045551 cinnamyl-alcohol dehydrogenase activity IEP Neighborhood
BP GO:0048578 positive regulation of long-day photoperiodism, flowering IEP Neighborhood
BP GO:0048584 positive regulation of response to stimulus IEP Neighborhood
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP Neighborhood
BP GO:0050898 nitrile metabolic process IEP Neighborhood
BP GO:0080028 nitrile biosynthetic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901658 glycosyl compound catabolic process IEP Neighborhood
BP GO:2000028 regulation of photoperiodism, flowering IEP Neighborhood
InterPro domains Description Start Stop
IPR004146 DC1 367 414
IPR004146 DC1 485 528
IPR004146 DC1 172 216
IPR004146 DC1 282 329
IPR004146 DC1 228 272
No external refs found!