MA_64083g0010

Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 650.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_64083g0010
Cluster	HCCA: Cluster_354

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00222920	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00014p00068600	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g43980,...	0.05	Archaeplastida
AMTR_s00019p00110050	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00029p00235510	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
AMTR_s00030p00109240	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
AMTR_s00039p00132380	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
AMTR_s00046p00214930	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
AMTR_s00129p00082590	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g19720...	0.05	Archaeplastida
AMTR_s00130p00019530	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
AMTR_s00147p00097570	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
AT2G02980	OTP85	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Archaeplastida
AT3G29230	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT4G18750	DOT4	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
GSVIVT01008965001	No alias	Pentatricopeptide repeat-containing protein At4g18520,...	0.03	Archaeplastida
GSVIVT01025295001	No alias	Pentatricopeptide repeat-containing protein At2g22410,...	0.03	Archaeplastida
GSVIVT01033389001	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
GSVIVT01035491001	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
Gb_00862	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_01327	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_02060	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_03345	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
Gb_03571	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
Gb_03997	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
Gb_04449	No alias	RNA editing factor (MEF19)	0.04	Archaeplastida
Gb_05939	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_07723	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_07727	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_08518	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
Gb_08744	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_09409	No alias	RNA editing factor (MEF19). RNA editing factor (OTP82)	0.04	Archaeplastida
Gb_10157	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_10709	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
Gb_11688	No alias	OTP70 plastidial RNA splicing factor	0.03	Archaeplastida
Gb_12004	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_12555	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
Gb_13227	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
Gb_14172	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_14324	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
Gb_14445	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_16448	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.04	Archaeplastida
Gb_20749	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_21054	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_21442	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
Gb_21714	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_23083	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_23084	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.03	Archaeplastida
Gb_23089	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Gb_23678	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
Gb_24928	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.05	Archaeplastida
Gb_25283	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
Gb_25359	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_25869	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.03	Archaeplastida
Gb_26340	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.06	Archaeplastida
Gb_26526	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.04	Archaeplastida
Gb_27176	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_27437	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
Gb_27880	No alias	RNA editing factor (ECB2/VAC1)	0.04	Archaeplastida
Gb_28288	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
Gb_30146	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_30918	No alias	RNA editing factor (OTP82)	0.04	Archaeplastida
Gb_33210	No alias	RNA editing factor (OTP82)	0.04	Archaeplastida
Gb_36177	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
Gb_36434	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.04	Archaeplastida
Gb_36806	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_38158	No alias	OTP70 plastidial RNA splicing factor	0.03	Archaeplastida
Gb_38248	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
Gb_38417	No alias	OTP70 plastidial RNA splicing factor	0.03	Archaeplastida
Gb_38750	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_39402	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_39406	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_39702	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_39725	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Gb_40040	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.04	Archaeplastida
Gb_40766	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
LOC_Os09g39970.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
MA_211508g0010	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
MA_805687g0010	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
MA_812716g0010	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
MA_83662g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_90090g0010	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.04	Archaeplastida
Smo100125	No alias	Pentatricopeptide repeat-containing protein At5g39350...	0.02	Archaeplastida
Smo105356	No alias	Pentatricopeptide repeat-containing protein At3g63370,...	0.02	Archaeplastida
Smo137234	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.02	Archaeplastida
Smo47998	No alias	Pentatricopeptide repeat-containing protein At2g34400...	0.02	Archaeplastida
Smo70138	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Solyc01g007850.2.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Solyc03g111210.4.1	No alias	RNA editing factor (OTP80)	0.04	Archaeplastida
Solyc05g006800.2.1	No alias	Pentatricopeptide repeat-containing protein At1g59720,...	0.04	Archaeplastida
Solyc07g065730.1.1	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.04	Archaeplastida
Solyc09g082450.1.1	No alias	RNA editing factor (YS1)	0.03	Archaeplastida
Solyc11g008940.1.1	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.04	Archaeplastida
Solyc11g011860.1.1	No alias	Pentatricopeptide repeat-containing protein At3g14330...	0.03	Archaeplastida
Solyc11g071370.1.1	No alias	RNA editing factor (CLB19)	0.03	Archaeplastida
Zm00001e029119_P001	No alias	Pentatricopeptide repeat-containing protein At2g33760...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	614	639
IPR002885	Pentatricopeptide_repeat	546	569
IPR002885	Pentatricopeptide_repeat	75	99
IPR002885	Pentatricopeptide_repeat	470	517
IPR002885	Pentatricopeptide_repeat	168	213
IPR002885	Pentatricopeptide_repeat	369	412
IPR002885	Pentatricopeptide_repeat	268	316
IPR002885	Pentatricopeptide_repeat	125	166
IPR032867	DYW_dom	644	766
IPR032867	DYW_dom	767	804

External Links

No external refs found!

MA_64083g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation