Description : Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana (sp|q9ln69|ppr50_arath : 504.0)
Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_64750g0010 | |
Cluster | HCCA: Cluster_360 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00019p00203030 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
AMTR_s00048p00141020 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g01110... | 0.04 | Archaeplastida | |
AMTR_s00059p00156460 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
AMTR_s00061p00202160 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g55840... | 0.03 | Archaeplastida | |
AMTR_s00080p00074320 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g26680,... | 0.03 | Archaeplastida | |
AT1G11710 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT1G19290 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT4G26680 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
AT5G01110 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
AT5G40400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Archaeplastida | |
AT5G55840 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Archaeplastida | |
AT5G59900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
GSVIVT01008360001 | No alias | Pentatricopeptide repeat-containing protein At5g40400... | 0.04 | Archaeplastida | |
GSVIVT01009638001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | Archaeplastida | |
GSVIVT01010244001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
GSVIVT01012774001 | No alias | Pentatricopeptide repeat-containing protein At5g55840... | 0.04 | Archaeplastida | |
GSVIVT01025017001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida | |
Gb_03188 | No alias | Pentatricopeptide repeat-containing protein At2g15630,... | 0.03 | Archaeplastida | |
Gb_03214 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida | |
Gb_07698 | No alias | Pentatricopeptide repeat-containing protein At3g54980,... | 0.07 | Archaeplastida | |
Gb_16098 | No alias | Pentatricopeptide repeat-containing protein At5g39710... | 0.02 | Archaeplastida | |
Gb_20239 | No alias | Pentatricopeptide repeat-containing protein At5g40400... | 0.06 | Archaeplastida | |
Gb_28619 | No alias | Pentatricopeptide repeat-containing protein At1g11710,... | 0.04 | Archaeplastida | |
Gb_30066 | No alias | Pentatricopeptide repeat-containing protein At5g39710... | 0.03 | Archaeplastida | |
Gb_41726 | No alias | Pentatricopeptide repeat-containing protein At2g16880... | 0.03 | Archaeplastida | |
LOC_Os03g40690.1 | No alias | Pentatricopeptide repeat-containing protein At5g55840... | 0.02 | Archaeplastida | |
LOC_Os05g19390.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
LOC_Os12g21930.1 | No alias | Pentatricopeptide repeat-containing protein At2g15980... | 0.02 | Archaeplastida | |
MA_139384g0010 | No alias | Pentatricopeptide repeat-containing protein At2g16880... | 0.04 | Archaeplastida | |
MA_278706g0010 | No alias | Pentatricopeptide repeat-containing protein At2g15630,... | 0.04 | Archaeplastida | |
Solyc02g021270.3.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.06 | Archaeplastida | |
Solyc07g047620.3.1 | No alias | Pentatricopeptide repeat-containing protein At4g26680,... | 0.03 | Archaeplastida | |
Solyc10g051010.3.1 | No alias | Pentatricopeptide repeat-containing protein At2g15980... | 0.04 | Archaeplastida | |
Solyc11g073270.1.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
Zm00001e035584_P001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003689 | DNA clamp loader activity | IEP | Neighborhood |
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity | IEP | Neighborhood |
CC | GO:0005663 | DNA replication factor C complex | IEP | Neighborhood |
BP | GO:0006260 | DNA replication | IEP | Neighborhood |
BP | GO:0006479 | protein methylation | IEP | Neighborhood |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
MF | GO:0008276 | protein methyltransferase activity | IEP | Neighborhood |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Neighborhood |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Neighborhood |
BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
BP | GO:0016570 | histone modification | IEP | Neighborhood |
BP | GO:0016571 | histone methylation | IEP | Neighborhood |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Neighborhood |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
BP | GO:0032259 | methylation | IEP | Neighborhood |
MF | GO:0033170 | protein-DNA loading ATPase activity | IEP | Neighborhood |
BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
MF | GO:0042054 | histone methyltransferase activity | IEP | Neighborhood |
MF | GO:0043015 | gamma-tubulin binding | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 456 | 488 |
IPR002885 | Pentatricopeptide_repeat | 665 | 696 |
IPR002885 | Pentatricopeptide_repeat | 211 | 243 |
IPR002885 | Pentatricopeptide_repeat | 76 | 123 |
IPR002885 | Pentatricopeptide_repeat | 389 | 438 |
IPR002885 | Pentatricopeptide_repeat | 144 | 193 |
IPR002885 | Pentatricopeptide_repeat | 250 | 298 |
IPR002885 | Pentatricopeptide_repeat | 705 | 753 |
IPR002885 | Pentatricopeptide_repeat | 319 | 368 |
IPR002885 | Pentatricopeptide_repeat | 494 | 543 |
IPR002885 | Pentatricopeptide_repeat | 599 | 647 |
IPR002885 | Pentatricopeptide_repeat | 46 | 65 |
IPR002885 | Pentatricopeptide_repeat | 777 | 806 |
No external refs found! |