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  5. MA_64750g0010

MA_64750g0010


Description : Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana (sp|q9ln69|ppr50_arath : 504.0)


Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_64750g0010
Cluster HCCA: Cluster_360

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.04 Archaeplastida
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.03 Archaeplastida
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.03 Archaeplastida
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G19290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.04 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
GSVIVT01012774001 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.04 Archaeplastida
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.07 Archaeplastida
Gb_16098 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.02 Archaeplastida
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.06 Archaeplastida
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.04 Archaeplastida
Gb_30066 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
Gb_41726 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.03 Archaeplastida
LOC_Os03g40690.1 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
LOC_Os05g19390.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os12g21930.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.02 Archaeplastida
MA_139384g0010 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.04 Archaeplastida
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.04 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc07g047620.3.1 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.03 Archaeplastida
Solyc10g051010.3.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.04 Archaeplastida
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 456 488
IPR002885 Pentatricopeptide_repeat 665 696
IPR002885 Pentatricopeptide_repeat 211 243
IPR002885 Pentatricopeptide_repeat 76 123
IPR002885 Pentatricopeptide_repeat 389 438
IPR002885 Pentatricopeptide_repeat 144 193
IPR002885 Pentatricopeptide_repeat 250 298
IPR002885 Pentatricopeptide_repeat 705 753
IPR002885 Pentatricopeptide_repeat 319 368
IPR002885 Pentatricopeptide_repeat 494 543
IPR002885 Pentatricopeptide_repeat 599 647
IPR002885 Pentatricopeptide_repeat 46 65
IPR002885 Pentatricopeptide_repeat 777 806
No external refs found!