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  5. AT5G58500

AT5G58500 (LSH5)


Aliases : LSH5

Description : Protein of unknown function (DUF640)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G58500
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00052610 evm_27.TU.AmTr_v1... Protein G1-like2 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AMTR_s00153p00047660 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.04 Archaeplastida
AMTR_s00155p00022580 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 Archaeplastida
AT1G16910 LSH8 Protein of unknown function (DUF640) 0.01 Archaeplastida
GSVIVT01020708001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.04 Archaeplastida
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.03 Archaeplastida
LOC_Os01g61310.1 No alias Protein G1-like7 OS=Oryza sativa subsp. indica... 0.01 Archaeplastida
LOC_Os05g28040.1 No alias Protein G1-like9 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
LOC_Os05g39500.1 No alias Protein G1-like8 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Mp2g00330.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Archaeplastida
Pp3c20_17990V3.1 No alias Protein of unknown function (DUF640) 0.02 Archaeplastida
Pp3c24_8490V3.1 No alias Protein of unknown function (DUF640) 0.02 Archaeplastida
Solyc04g009980.4.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.02 Archaeplastida
Solyc06g083860.2.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Archaeplastida
Solyc07g062470.4.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 Archaeplastida
Solyc07g150147.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.04 Archaeplastida
Solyc10g007310.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 Archaeplastida
Solyc10g008000.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.05 Archaeplastida
Solyc12g014260.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 Archaeplastida
Zm00001e027222_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.04 Archaeplastida
Zm00001e031512_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001944 vasculature development IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004034 aldose 1-epimerase activity IEP Neighborhood
MF GO:0004126 cytidine deaminase activity IEP Neighborhood
MF GO:0004567 beta-mannosidase activity IEP Neighborhood
MF GO:0005351 carbohydrate:proton symporter activity IEP Neighborhood
MF GO:0005365 myo-inositol transmembrane transporter activity IEP Neighborhood
MF GO:0005366 myo-inositol:proton symporter activity IEP Neighborhood
MF GO:0005402 carbohydrate:cation symporter activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005615 extracellular space IEP Neighborhood
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Neighborhood
BP GO:0006216 cytidine catabolic process IEP Neighborhood
BP GO:0006624 vacuolar protein processing IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008655 pyrimidine-containing compound salvage IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009164 nucleoside catabolic process IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009698 phenylpropanoid metabolic process IEP Neighborhood
BP GO:0009699 phenylpropanoid biosynthetic process IEP Neighborhood
BP GO:0009718 anthocyanin-containing compound biosynthetic process IEP Neighborhood
BP GO:0009744 response to sucrose IEP Neighborhood
BP GO:0009812 flavonoid metabolic process IEP Neighborhood
BP GO:0009813 flavonoid biosynthetic process IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009964 negative regulation of flavonoid biosynthetic process IEP Neighborhood
BP GO:0009972 cytidine deamination IEP Neighborhood
BP GO:0010023 proanthocyanidin biosynthetic process IEP Neighborhood
BP GO:0010214 seed coat development IEP Neighborhood
BP GO:0010224 response to UV-B IEP Neighborhood
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Neighborhood
MF GO:0010341 gibberellin carboxyl-O-methyltransferase activity IEP Neighborhood
MF GO:0015166 polyol transmembrane transporter activity IEP Neighborhood
BP GO:0015791 polyol transport IEP Neighborhood
BP GO:0015798 myo-inositol transport IEP Neighborhood
BP GO:0015850 organic hydroxy compound transport IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016711 flavonoid 3'-monooxygenase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016985 mannan endo-1,4-beta-mannosidase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
CC GO:0031312 extrinsic component of organelle membrane IEP Neighborhood
MF GO:0033729 anthocyanidin reductase activity IEP Neighborhood
BP GO:0034285 response to disaccharide IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Neighborhood
CC GO:0042406 extrinsic component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0042454 ribonucleoside catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
MF GO:0045552 dihydrokaempferol 4-reductase activity IEP Neighborhood
BP GO:0046087 cytidine metabolic process IEP Neighborhood
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Neighborhood
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
BP GO:0046283 anthocyanin-containing compound metabolic process IEP Neighborhood
MF GO:0050113 inositol oxygenase activity IEP Neighborhood
MF GO:0050589 leucocyanidin oxygenase activity IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0071944 cell periphery IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Neighborhood
BP GO:1900384 regulation of flavonol biosynthetic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1901658 glycosyl compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 13 133
No external refs found!